View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_2 (Length: 778)
Name: NF13133_low_2
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 625; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 625; E-Value: 0
Query Start/End: Original strand, 13 - 763
Target Start/End: Original strand, 822509 - 823244
Alignment:
| Q |
13 |
aagaatatccttccggggttggttttggattcagatgttgacataactagtgtaggagcctgtgtcttgcacaaggcagataagcattgtgatgaaaata |
112 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||| |
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| T |
822509 |
aagaatatccttccggggttggttttggattcaaatgttgacataactagtgtaggagcccgtgtcttgcacaaggcagataagcattgcgatgaaaata |
822608 |
T |
|
| Q |
113 |
tataatcatgtcatttttaaaagtatatatgcataaccttgcgataaaattagacataaattatggatttaatatttgccaaaacataacaccattatcc |
212 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
822609 |
tataatcatgtcatttttaaaagtatatatgcgtaaccttgcgataaaattagacataaattatggatttaatatttgccaaaacataacatcattatcc |
822708 |
T |
|
| Q |
213 |
tgtgatcctttgtgtttctgttttccgtctaatcagtagaacttttattgtagaaataatgagtatgattttatccaatacaggtccttgaatatcgcgg |
312 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
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| T |
822709 |
tgtgatcctttgtgtttctgttttccatctaatcagtagaacttttattgtagaaataatgagtatgattttatccaatgcaggtccttgaatatcgtgg |
822808 |
T |
|
| Q |
313 |
tgaacaagtaaggcgcagcgttgccgatctaagggaggcgcggtataaattagaaaggaaagactgctatgtaagttagttaattctcccccttttctga |
412 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
822809 |
tgaacaagtaaggcgcagcgttgccgatctaagggaggcgcggtataaattagaaaggaaagactgctatgta----agttaattctcccccttttctga |
822904 |
T |
|
| Q |
413 |
tgatttcatcctcttgtccttgactttatttttgtccactttggtttcctctgctctattattttccctctgttttgatgctgattttttctgtgcatct |
512 |
Q |
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| T |
822905 |
tgatttcatcctcttgtccttgactttatttttgtccactttggtttcctctgctctattattttccctctgttttgatgctgattttttctgtgcatct |
823004 |
T |
|
| Q |
513 |
taattgttaacattttatcacattaaattcttctggcttcnnnnnnnggcagctgttcaaaattagtgaagaggtggtagttgatgcaactgataaagga |
612 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
823005 |
taattgttaacattttatcacattaaattcttctggcttctttttttggcagctgttcaaaattagtgaagaggtggtagttgatgcaactgataaagga |
823104 |
T |
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| Q |
613 |
aatattgcacggctaattaaccattctgtaagtcaacctatctcaaaatgtacagttcactgctcacttttcgttgcaagaacttgtgagactg-tcctt |
711 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||||||| ||||| |
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| T |
823105 |
aatattgcacggctaattaaccattctgtaagtcaacc------------tacagttcactgctcacttttcattgcaagaacctgtgagactgttcctt |
823192 |
T |
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| Q |
712 |
ttaaaaactcaattggcaatcttgaaaacagctgatatcggcctatgtttat |
763 |
Q |
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| T |
823193 |
ttaaaaactcaattggcaatcttgaaaacagctgatatcggcctatgtttat |
823244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 561 - 645
Target Start/End: Complemental strand, 48480667 - 48480583
Alignment:
| Q |
561 |
gcagctgttcaaaattagtgaagaggtggtagttgatgcaactgataaaggaaatattgcacggctaattaaccattctgtaagt |
645 |
Q |
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|||||||||||| ||||| || || |||||| |||||||||||||||| |||||||||||||| |||| || |||||||||||| |
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| T |
48480667 |
gcagctgttcaagattagcgaggaagtggtaattgatgcaactgataagggaaatattgcacgtttaataaatcattctgtaagt |
48480583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 390
Target Start/End: Complemental strand, 41525882 - 41525785
Alignment:
| Q |
293 |
caggtccttgaatatcgcggtgaacaagtaaggcgcagcgttgccgatctaagggaggcgcggtataaattagaaaggaaagactgctatgtaagtta |
390 |
Q |
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||||| |||||||||||||| ||||||||||||||||| ||||| ||||| ||||| || || |||| | |||| ||||||||||||| || ||||| |
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| T |
41525882 |
caggttcttgaatatcgcggcgaacaagtaaggcgcagtgttgctgatctgagggaagcacgctatagagcagaagggaaagactgctacgtgagtta |
41525785 |
T |
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