View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13133_low_21 (Length: 441)
Name: NF13133_low_21
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_21 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 7221950 - 7222373
Alignment:
| Q |
1 |
acattctccatcataggttcctttatgagattctgccaattcgaaaagctgccaggaaattgtgagaaataaattaagctttcatattcccaaccaatac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7221950 |
acattctccatcataggttcctttatgagatcttgccaattcgaaaagctgccaggaaattgtgagaaataaattaagctttcatattcccaaccaatac |
7222049 |
T |
|
| Q |
101 |
tattggttacttcaatnnnnnnnnnnnnnnnnnnnnctacaagctacaaatgtgcatttttctatacatgtaattggtatattgtctagatttaaatata |
200 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
7222050 |
tattggttacttcaataaaaaaaaaatatata----ctacaagctacaaatgtgcatttttctatacatgtaattggtatattgtctaggtttaaatata |
7222145 |
T |
|
| Q |
201 |
agcnnnnnnnnn-----gtacttatttttcataccaattttgctttattgaggagacggcgagcatatttaggatcaacatgcctaaaaacaatggaaga |
295 |
Q |
| |
|
|| | |||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
7222146 |
agaagaagaaaaaaaaagaacttatttttcataccaattttgctttattgaggagacggcgagaatatttgggatcaacatgcctaaaaacaatggaaga |
7222245 |
T |
|
| Q |
296 |
agcagccatagcagcagaagtttcagctgcaatctcagtaccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggt |
395 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7222246 |
agcagccatagcagcagaagtttcagctgcaatctcagtgccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggt |
7222345 |
T |
|
| Q |
396 |
gcccaacaatggtgatcatcaactgggt |
423 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
7222346 |
gcccaacaatggtgatcatcaactgggt |
7222373 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 226 - 412
Target Start/End: Original strand, 48526791 - 48526977
Alignment:
| Q |
226 |
ataccaattttgctttattgaggagacggcgagcatatttaggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctgc |
325 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||| ||||| ||| ||||||||||||||||||| ||||||||| |||| ||||||| || |
|
|
| T |
48526791 |
ataccaattttgctttgttgaggagacgacgagcatatttacgatcagtatgtctaaaaacaatggaagaagaagccatagctgcagccgtttcagaagc |
48526890 |
T |
|
| Q |
326 |
aatctcagtaccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatc |
412 |
Q |
| |
|
||||||| |||||||||||||||||||||| | |||||| | ||| ||||||||||| ||||| ||||| ||||||||||| ||||| |
|
|
| T |
48526891 |
aatctcactaccaggtgtgttactatcaatgactttaaccgatctttttgtcttcattttttctggtggagcccaacaatgatgatc |
48526977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 48526595 - 48526655
Alignment:
| Q |
2 |
cattctccatcataggttcctttatgagattctgccaattcgaaaagctgccaggaaattg |
62 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| |||||| |||||||||||||||||||||| |
|
|
| T |
48526595 |
cattctccatcatatgttcctttatgtgattttgccaaatcgaaaagctgccaggaaattg |
48526655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 3e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 232 - 419
Target Start/End: Complemental strand, 50305553 - 50305366
Alignment:
| Q |
232 |
attttgctttattgaggagacggcgagcatatttaggatcaacatgcctaaaaacaatggaagaagcagccatagcagcagaagtttcagctgcaatctc |
331 |
Q |
| |
|
||||||||||||| |||||| | |||||||||||| |||||||||| ||||||||||||||||||| ||||||| |||||||||||||||||||||||| |
|
|
| T |
50305553 |
attttgctttattaaggagatgacgagcatatttacgatcaacatgtctaaaaacaatggaagaagtagccataacagcagaagtttcagctgcaatctt |
50305454 |
T |
|
| Q |
332 |
agtaccaggtgtgttactatcaattaatttaactgttctctttgtcttcatattttccggtggtgcccaacaatggtgatcatcaact |
419 |
Q |
| |
|
| ||| ||||||||||| |||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |||||||||||||| |
|
|
| T |
50305453 |
aaaaccgggtgtgttactgtcaattaatttatatgttctctttgtcttcatactttctggtggtgcccaacaacggtgatcatcaact |
50305366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 50305764 - 50305677
Alignment:
| Q |
1 |
acattctccatcataggttcctttatgagattctgccaattcgaaaagctgccaggaaattgtgagaaataaattaagctttcatatt |
88 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||||| ||||| || ||| |||||| |||||||||||||||| ||||||| |
|
|
| T |
50305764 |
acattctccatcataggttcctttatgaaatcttgccaattcaaaaagttgtcagaaaattggaagaaataaattaagctatcatatt |
50305677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University