View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_22 (Length: 434)
Name: NF13133_low_22
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_22 |
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Alignment Details
Target: chr4 (Bit Score: 176; Significance: 1e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 52381711 - 52381536
Alignment:
| Q |
21 |
cattactatatatttgctactaaattactaatttaacagcagatgtagagaaacaaactggttaaaactctttctgtaaaagaaaatcattgctagagaa |
120 |
Q |
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| T |
52381711 |
cattactatatatttgctactaaattactaatttaacagcagatgtagagaaacaaactggttaaaactctttctgtaaaagaaaatcattgctagagaa |
52381612 |
T |
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| Q |
121 |
ttaccttactttatgctacagtttccaaattgtcaaaatagaaaggtaactctggtctgtactgtaaaattaactg |
196 |
Q |
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| T |
52381611 |
ttaccttactttatgctacagtttccaaattgtcaaaatagaaaggtaactctggtctgtactgtaaaattaactg |
52381536 |
T |
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Target: chr4; HSP #2
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 257 - 417
Target Start/End: Complemental strand, 52381475 - 52381315
Alignment:
| Q |
257 |
gacacagttgacttgtataggctctagttcttgcacagcttttgcagacttactttttcctcctctatctctcttcttcctacattttgttactccctct |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |
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| T |
52381475 |
gacacagttgacttgtataggctctagttcttgcacagcttttgcagacttactttttcctcctctatttctcttcttcctacattttgttactacctct |
52381376 |
T |
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| Q |
357 |
ccttccgaaccatctaaccaaccccaatcctgatttccctcccatcctgctgcacaggcac |
417 |
Q |
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| T |
52381375 |
ccttccgaaccatctaaccaaccccaatcctgatttccctcccatcctgctgcacaggcac |
52381315 |
T |
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