View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_27 (Length: 395)
Name: NF13133_low_27
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_27 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 305; Significance: 1e-171; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 305; E-Value: 1e-171
Query Start/End: Original strand, 17 - 395
Target Start/End: Complemental strand, 6022026 - 6021640
Alignment:
| Q |
17 |
aaagtttaatgaaatgaaaccaatataaatctttgtctatgctttctaaatgagacccaattatatatagaaagaatgtgtaacatatttgacattttca |
116 |
Q |
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| T |
6022026 |
aaagtttaatgaaatgaaaccaatataaatctttgtctatgctttctaaatgtgacccaattatatatagaaagaatgtgtaacatatttgacattttca |
6021927 |
T |
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| Q |
117 |
tcattgcgcgtttgtgtgatatgnnnnnnnnnnnttacatctttgaattttcctttgattaagaggaggatgcaaaattcgttattatcacatgctataa |
216 |
Q |
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| T |
6021926 |
tcattgcgcgtttgtgtgatatgaaaaaaaaaaattacatctttgaattttccttggattaagaggaggatgcaaaattcgttattatcacatgctataa |
6021827 |
T |
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| Q |
217 |
tgtaaaaaatgtccacaaggaaggataatatatggaaatttgtcaatagcttgt--------tattatcacctaatttggaaattttgaatacgagaggt |
308 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
6021826 |
tgtaaaaaatgtccacaaggaagaataatatatggaaatttgtcaatagcttgttattatgatattatcacctaatttggaaattttgaatacgagaggt |
6021727 |
T |
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| Q |
309 |
ggttcttagttttgactatatggcctaaaaaataaccctagtcatttatttatttttgaccaaaccctagtcatatttattactagt |
395 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6021726 |
agttcttagttttgactatatggcctaaaaaataaccctagtcatttatttttttttgaccaaaccctagtcatatttattactagt |
6021640 |
T |
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