View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13133_low_28 (Length: 375)

Name: NF13133_low_28
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13133_low_28
NF13133_low_28
[»] chr6 (11 HSPs)
chr6 (2-360)||(9873768-9874130)
chr6 (132-292)||(9866322-9866482)
chr6 (1-140)||(9866524-9866663)
chr6 (1-113)||(9886791-9886903)
chr6 (1-175)||(9867145-9867319)
chr6 (1-117)||(9873181-9873296)
chr6 (304-360)||(9872949-9873005)
chr6 (241-292)||(9874303-9874354)
chr6 (304-359)||(9885868-9885923)
chr6 (304-351)||(9973756-9973803)
chr6 (307-351)||(9952294-9952338)
[»] chr8 (2 HSPs)
chr8 (1-136)||(40956615-40956750)
chr8 (28-117)||(40943704-40943793)
[»] chr3 (1 HSPs)
chr3 (158-198)||(46522030-46522070)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 2 - 360
Target Start/End: Original strand, 9873768 - 9874130
Alignment:
Q  2 aagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttga 101  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |  | |||||||||||||||||||||    
T  9873768 aagaagaggagccgccattggaggatgctaaacccattgacgaaccggttaggaattccgaaagaggaaaaaaaaata-aaatcattttcattcctttga 9873866  T
Q  102 attcgatggaaaccaacacacactggtaagtatatatatc------aacttttctttttcttcgcattcggagccaaactcctgaacatacatttcaaaa 195  Q
    |||||||||||||||||||||||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  9873867 attcgatggaaaccaacacacacttgtaagtatatatatatatatgaacttttctttttcttcgcattcggagccaaactcctgaacatgcatttcaaaa 9873966  T
Q  196 atgatatatataattacaagtgagagaggagatttcaaactcattttcaaagttattcatatacaattgtattcattatatgtttacaattgcaaaaaat 295  Q
    |||||||||||| |||||||||||||||||  ||||||||||||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  9873967 atgatatatatacttacaagtgagagaggatttttcaaactcattttcaaagttattcatcaacaatt-tattcattatatgtttacaattgcaaaaaat 9874065  T
Q  296 atgaactgattaaaatatcatcaacgtaagaagtttactaaccttttctttcagcctagcattct 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9874066 atgaactgattaaaatatcatcaacgtaagaagtttactaaccttttctttcagcctagcattct 9874130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 132 - 292
Target Start/End: Complemental strand, 9866482 - 9866322
Alignment:
Q  132 tatatatatcaacttttctttttcttcgcattcggagccaaactcctgaacatacatttcaaaaatgatatatataattacaagtgagagaggagatttc 231  Q
    |||||||||||| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||     
T  9866482 tatatatatcaatttttcttgttctccgcattcggagccaaactcctgaacatacattccaaaaatgatatatatacttacaagtgagagaggagatttg 9866383  T
Q  232 aaactcattttcaaagttattcatatacaattgtattcattatatgtttacaattgcaaaa 292  Q
    |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||    
T  9866382 aaactcattttcaaagttattcatctacaattgtattgattatatgtttacaattgcaaaa 9866322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 1 - 140
Target Start/End: Complemental strand, 9866663 - 9866524
Alignment:
Q  1 gaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttg 100  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  9866663 gaagaagaggagccgccattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggataaaacagaataaatcattttcattcctttg 9866564  T
Q  101 aattcgatggaaaccaacacacactggtaagtatatatat 140  Q
    ||||| |||||||||| |||||||| |||| |||||||||    
T  9866563 aattcaatggaaaccagcacacacttgtaaatatatatat 9866524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 9886791 - 9886903
Alignment:
Q  1 gaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttg 100  Q
    |||||||||||||| | ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||     
T  9886791 gaagaagaggagccaccattggtggatgctaaacccattgacgaaccggttagaaattccggaagaggaaaaaacagaataaatcattttcattcctttc 9886890  T
Q  101 aattcgatggaaa 113  Q
    |||||||||||||    
T  9886891 aattcgatggaaa 9886903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 9867145 - 9867319
Alignment:
Q  1 gaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaat--cattttcattcctt 98  Q
    ||||||||| | |||| ||||||||||||||||||||||| ||  || ||||||  ||||||||  |||||||  |||||||||  ||||||||||||||    
T  9867145 gaagaagagcatccgccattggaggatgctaaacccattggcgc-cctgttagggtttccggaatgggaaaaat-agaataaatatcattttcattcctt 9867242  T
Q  99 tgaattcgatggaaaccaacacacactggtaagtatatatatcaacttttctttttcttcgcattcggagccaaact 175  Q
    | ||||||||| ||||||| ||||||| |||||||||||||||||  |||||| ||||  |||||| ||||||||||    
T  9867243 tcaattcgatgaaaaccaatacacacttgtaagtatatatatcaatctttcttgttctctgcattccgagccaaact 9867319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 9873296 - 9873181
Alignment:
Q  1 gaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttg 100  Q
    ||||||||| ||| || |||| || ||| ||||||||||| |||| | ||||||  |||||||| |||||||| || |||||||||||||||||| |||     
T  9873296 gaagaagagcagctgccattgaagaatgttaaacccattggcgaaacagttagggtttccggaataggaaaaa-caaaataaatcattttcattctttta 9873198  T
Q  101 aattcgatggaaaccaa 117  Q
    |||||||| ||||||||    
T  9873197 aattcgatagaaaccaa 9873181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 304 - 360
Target Start/End: Original strand, 9872949 - 9873005
Alignment:
Q  304 attaaaatatcatcaacgtaagaagtttactaaccttttctttcagcctagcattct 360  Q
    |||||| |||||||| || |||||||||||||||||||||||||||||||| |||||    
T  9872949 attaaattatcatcagcgaaagaagtttactaaccttttctttcagcctagaattct 9873005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 241 - 292
Target Start/End: Original strand, 9874303 - 9874354
Alignment:
Q  241 ttcaaagttattcatatacaattgtattcattatatgtttacaattgcaaaa 292  Q
    |||||||| |||||| |||||||||||| |||||||||||||||||||||||    
T  9874303 ttcaaagtcattcatctacaattgtattgattatatgtttacaattgcaaaa 9874354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 304 - 359
Target Start/End: Original strand, 9885868 - 9885923
Alignment:
Q  304 attaaaatatcatcaacgtaagaagtttactaaccttttctttcagcctagcattc 359  Q
    |||||||||||||||||| |||||  ||| |||||||||||||||||||| |||||    
T  9885868 attaaaatatcatcaacgaaagaaacttagtaaccttttctttcagcctaacattc 9885923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 351
Target Start/End: Complemental strand, 9973803 - 9973756
Alignment:
Q  304 attaaaatatcatcaacgtaagaagtttactaaccttttctttcagcc 351  Q
    |||||||||| ||||| | ||||| |||||||||||||||||||||||    
T  9973803 attaaaatataatcaatgaaagaaatttactaaccttttctttcagcc 9973756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 307 - 351
Target Start/End: Original strand, 9952294 - 9952338
Alignment:
Q  307 aaaatatcatcaacgtaagaagtttactaaccttttctttcagcc 351  Q
    ||||||| ||||| | ||||| |||||||||||||||||||||||    
T  9952294 aaaatataatcaatgaaagaaatttactaaccttttctttcagcc 9952338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 40956615 - 40956750
Alignment:
Q  1 gaagaagaggagccgcaattggaggatgctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttg 100  Q
    ||||||||||||||||  |||||||||||||||||||||| | |||| ||||||  |||| ||||||||||||||| ||| |||||||||||||||||||    
T  40956615 gaagaagaggagccgcctttggaggatgctaaacccattggcaaaccagttagggtttccagaagaggaaaaaacaaaatcaatcattttcattcctttg 40956714  T
Q  101 aattcgatggaaaccaacacacactggtaagtatat 136  Q
    |||| |||||||||||  ||||||| ||||||||||    
T  40956715 aatttgatggaaaccagtacacacttgtaagtatat 40956750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 28 - 117
Target Start/End: Original strand, 40943704 - 40943793
Alignment:
Q  28 gctaaacccattgacgaaccggttaggaattccggaagaggaaaaaacagaataaatcattttcattcctttgaattcgatggaaaccaa 117  Q
    |||||||||||||  ||||| ||||||  ||| |||| ||||| |  ||||| |||||||||||| |||||||| ||||||||| |||||    
T  40943704 gctaaacccattggtgaacccgttaggttttctggaaaaggaagaggcagaaaaaatcattttcagtcctttgacttcgatggagaccaa 40943793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 198
Target Start/End: Complemental strand, 46522070 - 46522030
Alignment:
Q  158 cgcattcggagccaaactcctgaacatacatttcaaaaatg 198  Q
    ||||||| |||||||||||||| ||||||||| ||||||||    
T  46522070 cgcattcagagccaaactcctggacatacattccaaaaatg 46522030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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