View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_36 (Length: 297)
Name: NF13133_low_36
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_36 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 297
Target Start/End: Complemental strand, 39202128 - 39201842
Alignment:
| Q |
11 |
attctgcattctcatactctttctaaattgcagtgagtatccattgtcaatagttttggtaggagttggagatgggccgtgggagatgatgaaggaattt |
110 |
Q |
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| T |
39202128 |
attctgcattctcatactctttctaaattgcagtgagtatccattgtcaatagttttggtaggagttggagatgggccgtgggagatgatgaaggaattt |
39202029 |
T |
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| Q |
111 |
gatgacaacatcccttctcgggcgtttgacaattttcaggtttgggtttaattcatttgccatatataaatgataaatcttcgtattatgctcaaatgtg |
210 |
Q |
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| T |
39202028 |
gatgacaacatcccttctcgggcgtttgacaattttcaggtttgggtgtaattcatttgccatatataaatgttaaatcttcgtattatgctcaaatgtg |
39201929 |
T |
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| Q |
211 |
ataatgttgtttgtggctggctggatgtagtttgtgaattttacaaagataatgtcgaagaatgtaaatccaagtcgaagagagacg |
297 |
Q |
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| T |
39201928 |
ataatgttgtttgtggctggctggatgtagtttgtgaattttacaaagataatgtcgaagaatgtaaatccaagtcgaagagagacg |
39201842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 5e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 33 - 155
Target Start/End: Complemental strand, 37318406 - 37318284
Alignment:
| Q |
33 |
ctaaattgcagtgagtatccattgtcaatagttttggtaggagttggagatgggccgtgggagatgatgaaggaatttgatgacaacatcccttctcggg |
132 |
Q |
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| T |
37318406 |
ctaaattgcagtgagtatccgctgtcgatagttttggttggagttggagatggaccgtgggatatgatgagggaatttgacgataatattccagctcgag |
37318307 |
T |
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| Q |
133 |
cgtttgacaattttcaggtttgg |
155 |
Q |
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| T |
37318306 |
ccttcgacaattttcaggtttgg |
37318284 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 66 - 118
Target Start/End: Original strand, 7474148 - 7474200
Alignment:
| Q |
66 |
ttggtaggagttggagatgggccgtgggagatgatgaaggaatttgatgacaa |
118 |
Q |
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| T |
7474148 |
ttggttggtgttggagatggaccttgggacatgatgaaggagtttgatgacaa |
7474200 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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