View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13133_low_38 (Length: 288)
Name: NF13133_low_38
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_38 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 43441807 - 43442076
Alignment:
| Q |
1 |
tttggacggagccggactcttccaaagattggaaaacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||| |
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| T |
43441807 |
tttggacggagccggactcttccaaagattggaaaacacctcctcctctaaaccactcaacccttcttggtggagcacaccctcctccaaaactctataa |
43441906 |
T |
|
| Q |
101 |
gaggagcgcaccttatacttatcactctcctccggcaaccacacccacctatcctcttctccacccgacataacacctccaatgaggtctagtaagttac |
200 |
Q |
| |
|
|||||||||||| |||||||| ||| ||||||||||||||| ||||||||||||||||||||||| || ||||||| ||||||||||||||||||||| |
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| T |
43441907 |
gaggagcgcaccgtatacttaccaccctcctccggcaaccaatcccacctatcctcttctccacccaacgtaacaccatcaatgaggtctagtaagttac |
43442006 |
T |
|
| Q |
201 |
taataagatttctctcccaaaggaaaggttgtcttctccaagcaaaattccaaaacacctcgccgtcaata |
271 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||| |||| |||||||||||||||||| || |||||| |
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| T |
43442007 |
caataaggtttctctcccaaaggaaaagttgtcttct-caagtaaaattccaaaacacctcaccctcaata |
43442076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 22905051 - 22905318
Alignment:
| Q |
1 |
tttggacggagccggactcttccaaagattggaaaacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataa |
100 |
Q |
| |
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|||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
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| T |
22905051 |
tttggacggagccggactcttccaaagattagcaaacacctc---ctctaaaacactcaacccttgttgatggagcacaccctcctccaaaactctataa |
22905147 |
T |
|
| Q |
101 |
gaggagcgcaccttatacttatcactctcctccggcaaccacacccacctatcctcttctccacccgacataacacctccaatgaggtctagtaagttac |
200 |
Q |
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||||| |||||| |||| ||| ||| ||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| | ||| ||||||||| ||| |
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| T |
22905148 |
gaggaacgcaccgtatatttaccaccctcctccagcaaccaaacccacctatcctcttctccacccaaaataactcctcccacgagatctagtaagatac |
22905247 |
T |
|
| Q |
201 |
taataagatttctctcccaaaggaaaggttgtcttctccaagcaaaattccaaaacacctcgccgtcaata |
271 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
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|
| T |
22905248 |
caataaggtttctctcccaaaggaaaggttgtcttctccaagtaaaattccaaaacacctcaccatcaata |
22905318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 22956719 - 22956986
Alignment:
| Q |
1 |
tttggacggagccggactcttccaaagattggaaaacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| | ||||||||| ||||||| |||||||||||| |||||||| ||||||||||||||||||||||||| |
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|
| T |
22956719 |
tttggacggagccggactcttccaaagattagcaaacacctc---ctctaaaacactcaacccttgttgatggagcacaccctcctccaaaactctataa |
22956815 |
T |
|
| Q |
101 |
gaggagcgcaccttatacttatcactctcctccggcaaccacacccacctatcctcttctccacccgacataacacctccaatgaggtctagtaagttac |
200 |
Q |
| |
|
||||| |||||| |||| ||| ||| ||||||| ||||||| |||||||||||||||||||||||| | ||||| ||||| | ||| ||||||||| ||| |
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|
| T |
22956816 |
gaggaacgcaccgtatatttaccaccctcctccagcaaccaaacccacctatcctcttctccacccaaaataactcctcccacgagatctagtaagatac |
22956915 |
T |
|
| Q |
201 |
taataagatttctctcccaaaggaaaggttgtcttctccaagcaaaattccaaaacacctcgccgtcaata |
271 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||| || |||||| |
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|
| T |
22956916 |
caataaggtttctctcccaaaggaaaggttgtcttctccaagtaaaattccaaaacacctcaccatcaata |
22956986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 35 - 220
Target Start/End: Original strand, 52116621 - 52116806
Alignment:
| Q |
35 |
aacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagcgcaccttatacttatcactctcctccg |
134 |
Q |
| |
|
|||||||||||||||| | |||||||||||||| |||| ||||||||||||||||| |||||||||| |||||| |||||||||||| |||||||| |
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|
| T |
52116621 |
aacacctcctcctctaggacgctcaacccttcttggtggagaacaccctcctccaaaaccttataagaggaacgcaccgtatacttatcaccctcctccg |
52116720 |
T |
|
| Q |
135 |
gcaaccacacccacctatcctcttctccacccgacataacacctccaatgaggtctagtaagttactaataagatttctctcccaa |
220 |
Q |
| |
|
||||||| ||||| ||||||| ||||| |||| | | || ||||||||||| ||||||||||| |||||||||||||||||| |
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|
| T |
52116721 |
gcaaccaaacccaactatcctattctctacccaaattgactcctccaatgagagctagtaagttatcgataagatttctctcccaa |
52116806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 259
Target Start/End: Complemental strand, 24722283 - 24722025
Alignment:
| Q |
1 |
tttggacggagccggactcttccaaagattggaaaacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataa |
100 |
Q |
| |
|
|||||| |||| ||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| | | ||| | |||||||||||||||||| |
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|
| T |
24722283 |
tttggagggagtcggactcttccaaagattgtcaaacacctcctcctctaacacactcaacccttcttgaagaagaacatcatcctccaaaactctataa |
24722184 |
T |
|
| Q |
101 |
gaggagcgcaccttatacttatcactctcctccggcaaccacacccacctatcctcttctccacccgacataacacctccaatgaggtctagtaagttac |
200 |
Q |
| |
|
||||| |||||| | ||||| ||| ||||||||||| ||| ||||| |||||||| |||| |||| | | ||| ||||||||||| ||||||| |||| |
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|
| T |
24722183 |
gaggaccgcaccgaaaacttaccaccctcctccggcacccaaacccaactatcctcatctctacccaaaacaactcctccaatgagacctagtaaattac |
24722084 |
T |
|
| Q |
201 |
taataagatttctctcccaaaggaaaggttgtcttctccaagcaaaattccaaaacacc |
259 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| |||| ||| || |||||||| |||| |
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|
| T |
24722083 |
taataagatttctctcccaaatgaaaggttgtcgtctcgaagtaagattccaaagcacc |
24722025 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 111; Significance: 5e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 27408593 - 27408851
Alignment:
| Q |
1 |
tttggacggagccggactcttccaaagattggaaaacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataa |
100 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| |||||||| ||||||||| ||||||||||||||||| | | ||||| |||||||||||||||||| |
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|
| T |
27408593 |
tttggagggagccggtctcttccaaagattgtcaaacaccttctcctctaacacactcaacccttcttgaagaagaacaccatcctccaaaactctataa |
27408692 |
T |
|
| Q |
101 |
gaggagcgcaccttatacttatcactctcctccggcaaccacacccacctatcctcttctccacccgacataacacctccaatgaggtctagtaagttac |
200 |
Q |
| |
|
||||| |||||| | ||||| ||| ||||||||||| ||| ||||| |||||||| |||| |||| | | ||| ||||||||||| ||||||| |||| |
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|
| T |
27408693 |
gaggaccgcaccgaaaacttaccaccctcctccggcacccaaacccaactatcctcctctctacccaaaacaactcctccaatgagagctagtaaattac |
27408792 |
T |
|
| Q |
201 |
taataagatttctctcccaaaggaaaggttgtcttctccaagcaaaattccaaaacacc |
259 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | |||||||| || |||||||| |||| |
|
|
| T |
27408793 |
caataagatttctctcccaaatgaaaggttgccgtctccaagtaagattccaaagcacc |
27408851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 8 - 159
Target Start/End: Original strand, 30503471 - 30503622
Alignment:
| Q |
8 |
ggagccggactcttccaaagattggaaaacacctcctcctctaaagcactcaacccttcttgatggatcacaccctcctccaaaactctataagaggagc |
107 |
Q |
| |
|
|||||||||||| |||||||||||| ||||| |||||||||| ||||||||||||||||| | | |||||||||||||| |||||||||| || | |
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|
| T |
30503471 |
ggagccggactcctccaaagattggcgaacacttcctcctctagcacactcaacccttcttgaagaagtacaccctcctccaacactctataagtcgacc |
30503570 |
T |
|
| Q |
108 |
gcaccttatacttatcactctcctccggcaaccacacccacctatcctcttc |
159 |
Q |
| |
|
||||| | | ||| ||| ||||||||| || || ||||| ||||||||||| |
|
|
| T |
30503571 |
gcaccgtgaagttaccaccctcctccggtaatcaaacccatctatcctcttc |
30503622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 201 - 253
Target Start/End: Original strand, 37270526 - 37270578
Alignment:
| Q |
201 |
taataagatttctctcccaaaggaaaggttgtcttctccaagcaaaattccaa |
253 |
Q |
| |
|
|||| ||||| |||||||||||||||||||| | |||||||| || ||||||| |
|
|
| T |
37270526 |
taattagattactctcccaaaggaaaggttgacgtctccaagtaagattccaa |
37270578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 266
Target Start/End: Complemental strand, 51041664 - 51041613
Alignment:
| Q |
215 |
tcccaaaggaaaggttgtcttctccaagcaaaattccaaaacacctcgccgt |
266 |
Q |
| |
|
|||||||| ||||||||||| ||||||| || ||||||||||||||| |||| |
|
|
| T |
51041664 |
tcccaaagaaaaggttgtctcctccaagtaagattccaaaacacctctccgt |
51041613 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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