View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_4 (Length: 730)
Name: NF13133_low_4
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 275 - 722
Target Start/End: Complemental strand, 10218656 - 10218212
Alignment:
| Q |
275 |
gagaattttaaatatgaaaaatgtgatagaaaatattttaaaggtgagatttgaaaaacgcatgatagaacagaagtaatattatcaaacaagacaacaa |
374 |
Q |
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| T |
10218656 |
gagaatttaaaatatgaaaaatgtgatagaaaatattttaaaggtgagatttgaaaaacatatgatagaacagaagtaatattatcaaacaagacaacga |
10218557 |
T |
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| Q |
375 |
ggaattggacctaataccatcctttcttctagattaagtaatcctataaccaacaatattaatgctagaagctaattaagatatgttgataatcaactaa |
474 |
Q |
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| T |
10218556 |
ggaattggacctaataccatcctttcttctagattaagtaatcctataaccaacaatattaatgctagaagctaattaagatatgttgataatcaactaa |
10218457 |
T |
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| Q |
475 |
agtaacaactaattatggaaagcaaaagaagatatttgaataatatagttagctatttagagaggaaaggaaagtacttacctggtaattaagcataaac |
574 |
Q |
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| T |
10218456 |
agtaactactaattatggaaagcaaaagaagatatttg---aatatagttagctatttagagaggaaaggaaagtacttacctggtaattaagcataaac |
10218360 |
T |
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| Q |
575 |
acgatttgagaagtttggtatcaacaatataaattccttaattataatgagttatatatgttgccttctattctttgttttctattggttttgatatttt |
674 |
Q |
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| T |
10218359 |
acgatttgagaagtttggtatcaacaatataaattccttaattataatgagttatatatgttgccttctattctttgttttctattggttttgatatttt |
10218260 |
T |
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| Q |
675 |
tgttttggttattaattggtgcatgtgtatgtttaaatgatgatgatg |
722 |
Q |
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| T |
10218259 |
tgttttggttattaattggtgcatgtgtatgtttaaatgatgatgatg |
10218212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 15 - 210
Target Start/End: Complemental strand, 10218887 - 10218692
Alignment:
| Q |
15 |
aagaaagtccttgtacttttctttaaaggagaaagtcctttcttcataagaatat--caagctttcaaatgtttccttttgaatttgagttgtgatcact |
112 |
Q |
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| T |
10218887 |
aagaaagtccttctacttttctttaaaggagaaagtcctttcttcg-aagaataaaacaagctttcaaatgtttccttttgaatttgagttgtgatcact |
10218789 |
T |
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| Q |
113 |
tatcggattaatataagtagagaatggaaggactctctccattaacatgaaagatagtttcgtcaagaaaaagaaattaatatgaaagatagtgaaat |
210 |
Q |
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| T |
10218788 |
tatcagattaacatcattagagaatggacggactctctccattaacatgaaagatagtttcgtcaagaaaaa-aaattaatatgaaagatagtgaaat |
10218692 |
T |
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