View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_50 (Length: 242)
Name: NF13133_low_50
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 43986799 - 43986573
Alignment:
| Q |
1 |
cctaactcaattatcctatgcttttctgagcttcacttcactttacaaaagattcatttcttaatgcaagattgtactttagaaggttctagtctcttat |
100 |
Q |
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| T |
43986799 |
cctaactcaattatcctatgcttttcggagcttcacttcactttacaaaagattcatttcttaatgcaagattgtactttagaaggttctagtctcttat |
43986700 |
T |
|
| Q |
101 |
tgctcgcgaaatcgcaacacgtggcgtctcagcttcgttctcttattcgcgcagtggctattacattagatattttgcctttacacagagtcgaaatttg |
200 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43986699 |
tgctcgcgaaatctcaacacgtggcgtctcagcttcgttctcttattcgcgcagtggctattacattagatattttgcctttacacagagtcgaaatttg |
43986600 |
T |
|
| Q |
201 |
cgacgaagtcaaggagttagttgaatt |
227 |
Q |
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||||||||||||||||||||||||||| |
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| T |
43986599 |
cgacgaagtcaaggagttagttgaatt |
43986573 |
T |
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