View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_51 (Length: 240)
Name: NF13133_low_51
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_51 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 36148590 - 36148369
Alignment:
| Q |
19 |
tccatatgctgtcacattaatttgaaatccttgtgggctatcacttgctaatgtcaacacagggttgctgagtgaatcaaaattagaacttgatacatat |
118 |
Q |
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| T |
36148590 |
tccatatgccgtcacattaatctgaaatccttgtgggctatcacttgctaatgtcaacacagggttgctgagtgaatcaaaattagaacttgatacatat |
36148491 |
T |
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| Q |
119 |
tcaggaagaacatgatactgaatcaattctttttgttgtctttctcccaaggaattgaagtaacctgctttgagttctgaaaaggcaccatcatctggtg |
218 |
Q |
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| T |
36148490 |
tcaggaagaacatgatactgaatcaattctttttgttgtctttctcccaaggaattgaagtaacctgctttgagttctgaaaaggcaccatcatctggtg |
36148391 |
T |
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| Q |
219 |
caagaattgtcaagcctccatt |
240 |
Q |
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| T |
36148390 |
caagaattgtcaagcctccatt |
36148369 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 53 - 219
Target Start/End: Complemental strand, 5266543 - 5266377
Alignment:
| Q |
53 |
gggctatcacttgctaatgtcaacacagggttgctgagtgaatcaaaattagaacttgatacatattcaggaagaacatgatactgaatcaattcttttt |
152 |
Q |
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| T |
5266543 |
gggctatcactggcaagtgtcagcacagggttgctaagcgaatcaaaatttgagcttgagacgtaaacaggaagaacatgaaactgtatcagttctttct |
5266444 |
T |
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| Q |
153 |
gttgtctttctcccaaggaattgaagtaacctgctttgagttctgaaaaggcaccatcatctggtgc |
219 |
Q |
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| T |
5266443 |
gttggtgttcaccgagggaattgaagtatccggctttgagctgggaaaaggcaccatcatctggtgc |
5266377 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 53 - 222
Target Start/End: Complemental strand, 5269436 - 5269267
Alignment:
| Q |
53 |
gggctatcacttgctaatgtcaacacagggttgctgagtgaatcaaaattagaacttgatacatattcaggaagaacatgatactgaatcaattcttttt |
152 |
Q |
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| T |
5269436 |
gggctatcactggcaagtgtcagcaccgggttgctaagcgaatcaaaatttgagctggagacgtaaacaggaagaacatgaaactgtatcaattctttct |
5269337 |
T |
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| Q |
153 |
gttgtctttctcccaaggaattgaagtaacctgctttgagttctgaaaaggcaccatcatctggtgcaag |
222 |
Q |
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| T |
5269336 |
gttggcgttcaccgagggagttgaagtatccggctttcagctgcaaaaaggcaccgtcatcaggtgcaag |
5269267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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