View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_54 (Length: 233)
Name: NF13133_low_54
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_54 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 176; Significance: 6e-95; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 12 - 233
Target Start/End: Complemental strand, 32361756 - 32361542
Alignment:
| Q |
12 |
agaattatcatcataaattgtactaaatactaataaatgagcacactctacaggtttggtttttaatagttgattcctcttacaaaaatagttgattaat |
111 |
Q |
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| T |
32361756 |
agaattatcatcataaattgtactaa-------taaatgagcacactctacaagtttggtttttaatagttgattcctcttacaaaaatagttgattaat |
32361664 |
T |
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| Q |
112 |
gttataaaatttcttattttataacttaatattttttgtgaattataaggcaaagatgaaaaagaaacaatcaatatattatataaaaggccttctgtta |
211 |
Q |
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| T |
32361663 |
gttataaaatttcttattttataacttaatattttttgtgaattataaggcaaagatgaataagaaacaatcaatatattatataaaaggccttttgtta |
32361564 |
T |
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| Q |
212 |
tagattaaaaaatgatcataat |
233 |
Q |
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|||| ||||||||||| ||||| |
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| T |
32361563 |
tagaataaaaaatgattataat |
32361542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 77
Target Start/End: Complemental strand, 32378998 - 32378940
Alignment:
| Q |
12 |
agaattatcatcataaattgtactaaatactaataaatgagcacactctacaggtttggtttttaa |
77 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
32378998 |
agaattatcatcataaattgtactaa-------taaatgagcacactctacaagtttggtttttaa |
32378940 |
T |
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