View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13133_low_9 (Length: 598)
Name: NF13133_low_9
Description: NF13133
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13133_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 253; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 283 - 580
Target Start/End: Original strand, 10267594 - 10267901
Alignment:
| Q |
283 |
aacatacttttcacgaatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagg |
382 |
Q |
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| T |
10267594 |
aacatacttttcacgaatataagcaataggagcaaggatagaaagagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagg |
10267693 |
T |
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| Q |
383 |
gctactttggtaataacatggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattg |
482 |
Q |
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| T |
10267694 |
gctactttggtaataacgtggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgtgtcacttcccattggtgttgccattg |
10267793 |
T |
|
| Q |
483 |
----------aaattctagcttgatttctgaaattcaaacacaaagatgaactttttggtaacatgatagagaaatagagaggaattgttaattgagttg |
572 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
10267794 |
aaaaacaccaaaattctagcttgatttctgaaattcaaacacaaagatgagctttttggtaacatgatagagaaatagagaggaattgttaattgggttg |
10267893 |
T |
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| Q |
573 |
gtgatggt |
580 |
Q |
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|||||||| |
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| T |
10267894 |
gtgatggt |
10267901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 167; E-Value: 4e-89
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 10267279 - 10267453
Alignment:
| Q |
1 |
cttgacgaaacactgtccaagctcggccaatcatcttgatcacctaagatcaatacttacttttgacttttgtctatttgctctttccatattgttattc |
100 |
Q |
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| T |
10267279 |
cttgacgaaacactgtccaagctcggccaatcatcttgatcacctaagatcaatacttacttttgacttttgtctatttgttctttccatattgttattc |
10267378 |
T |
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| Q |
101 |
tattattgcagaaggatacttactcataaattgtgttttcttctatacttattcagtcagattatcagagtctta |
175 |
Q |
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| T |
10267379 |
tattattgcagaaggatacttactcataaattatgttttcttctatacttattcagtcagattatcagagtctta |
10267453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 326 - 470
Target Start/End: Complemental strand, 10284835 - 10284691
Alignment:
| Q |
326 |
agagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctgca |
425 |
Q |
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|||||||| ||||| || |||| ||| || || || || || || ||| |||||||||| || || ||||| |||||||| ||||||||||||||||| | |
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| T |
10284835 |
agagcaaggagatccctatagaagcagaagactaattggttgactccagcattaagggccaccttagtaatgacatggtagccaccattgaatagctgta |
10284736 |
T |
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| Q |
426 |
ccattgccatagccaaatgggctttccatgcgtcacttcccattg |
470 |
Q |
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| | |||||| |||||||||| |||||||| ||||||||||||| |
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| T |
10284735 |
caactgccatgcccaaatgggccttccatgcttcacttcccattg |
10284691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 326 - 428
Target Start/End: Original strand, 10283028 - 10283130
Alignment:
| Q |
326 |
agagcaagtagatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctgca |
425 |
Q |
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|||||||| |||||||| |||| ||| || || | || || || |||||||||||||| |||||||| || |||||||| ||||||| |||| ||||| |
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| T |
10283028 |
agagcaaggagatctctatagaagcagaagacaagttggttgactccaacattaagggcaactttggtgatgacatggtagccaccatataataactgca |
10283127 |
T |
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| Q |
426 |
cca |
428 |
Q |
| |
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||| |
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| T |
10283128 |
cca |
10283130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 335 - 423
Target Start/End: Complemental strand, 10292590 - 10292502
Alignment:
| Q |
335 |
agatctctgtagaggcaaaaaaccaactgattaaccccaacattaagggctactttggtaataacatggtaaccaccattgaatagctg |
423 |
Q |
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|||||||| |||| ||| || || || ||||| || ||| ||| ||||||||||| |||||||||| ||| ||||||||||| ||||| |
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| T |
10292590 |
agatctctatagaagcagaagactaattgattgactccagaattgagggctactttagtaataacatagtatccaccattgaaaagctg |
10292502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 393 - 510
Target Start/End: Original strand, 41883551 - 41883668
Alignment:
| Q |
393 |
taataacatggtaaccaccattgaatagctgcaccattgccatagccaaatgggctttccatgcgtcacttcccattgatgttgccattgaaattctagc |
492 |
Q |
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||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
41883551 |
taataacatggtaaccaccattgaataaccgcaccattgccatagccaaatgggctttccatctgtcacttcccattgctgttgccattgaaattctagc |
41883650 |
T |
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| Q |
493 |
ttgatttctgaaattcaa |
510 |
Q |
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|| ||||||||||||||| |
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| T |
41883651 |
ttaatttctgaaattcaa |
41883668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 25461302 - 25461257
Alignment:
| Q |
102 |
attattgcagaaggatacttactcataaattgtgttttcttctata |
147 |
Q |
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|||||| |||||||||||||||||||||||| |||||||||||||| |
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| T |
25461302 |
attattacagaaggatacttactcataaattctgttttcttctata |
25461257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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