View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13134_high_10 (Length: 254)
Name: NF13134_high_10
Description: NF13134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13134_high_10 |
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Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 81 - 237
Target Start/End: Complemental strand, 38391051 - 38390895
Alignment:
| Q |
81 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaatattgttcctgatctttcattgatttgacctacaataccacataataataaca |
180 |
Q |
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| T |
38391051 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaatattgttcctgatctttcattgatttgacctacaataccacataataataaca |
38390952 |
T |
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| Q |
181 |
aaaaattaatctattaaaactcattatgttctaaccatgcagttatttacacttatt |
237 |
Q |
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| T |
38390951 |
aaaaattaaactattaaaactcattatgttctaaccatgcagttatttatacttatt |
38390895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 219
Target Start/End: Complemental strand, 38389774 - 38389549
Alignment:
| Q |
7 |
tagattattctaact-ggtagcaagtttattagcaagggttatcccaacttcggtcagctgaaatgcctctgcatactgtctaggcgttagaatcctata |
105 |
Q |
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| T |
38389774 |
tagatttttctaactaggtagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcctctgcaaactctttaggtgtcacatacctata |
38389675 |
T |
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| Q |
106 |
aggtttttcattttccgcccaa----tattgttcctgatctttcattgatttgacc----tacaataccacataa----taataacaaaaaattaatcta |
193 |
Q |
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| T |
38389674 |
agatttttcattttccgcccaaaattaattgctcctgatctttcattgatgtgaccaacaaacaataccacataataattaataaccaaaaattaaacta |
38389575 |
T |
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| Q |
194 |
ttaaaactcattatgttctaaccatg |
219 |
Q |
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| T |
38389574 |
ttaaaactcattatattctaaccatg |
38389549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 22 - 219
Target Start/End: Original strand, 38390005 - 38390202
Alignment:
| Q |
22 |
ggtagcaagtttattagcaagggttatcccaacttcggtcagctgaaat-gcctctgcatactgtctaggcgttagaatcctataaggtttttcattttc |
120 |
Q |
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| T |
38390005 |
ggtagcaagtttaacaggaaggcttatcccaacatcagtgagttgaaattgcatc-gcaaactctctaggtgtcaaaaacatataaggtttttcatttac |
38390103 |
T |
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| Q |
121 |
cgcccaatattgttcctgatctttcattgatttgacctacaataccacataataataacaaaaaattaatctattaaaactcattatgttctaaccatg |
219 |
Q |
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| T |
38390104 |
cgctcaatattgctcctgatcttttattaatgtgagttacaataccacatattaataaccaaaaatgaaactattaaaactcattatcttctaatcatg |
38390202 |
T |
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