View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13134_high_2 (Length: 510)
Name: NF13134_high_2
Description: NF13134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13134_high_2 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 109 - 496
Target Start/End: Original strand, 6354573 - 6354937
Alignment:
| Q |
109 |
acattgttatattgatcaatttcctattaagttg---ggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgttg |
205 |
Q |
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| T |
6354573 |
acattgttatattgatcattttcctattaagttgttcggtattttgatgggtgccaatctaaggagagttgatacttggaagcctattgtgtcgtcgttg |
6354672 |
T |
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| Q |
206 |
atgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatggtgttgagtctat |
305 |
Q |
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| T |
6354673 |
atgaaaatgttgtctacttgttggaaaagtagacaattgtcaattagagagagtctgactttgattaactcagaattttcaatgatggtgttgagtctat |
6354772 |
T |
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| Q |
306 |
tgaagaagtggtggaggagatacaagtgtggtcgtgggagtggactaggactatgtacaggttccatctgtctctccctgtatgttctatgaatggtcgt |
405 |
Q |
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| T |
6354773 |
tgaagaa--------------------gtggtcgtgggagtgga------ctatgtacaagttccatctgcctctccctgtatgttctatgaatggtcgt |
6354846 |
T |
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| Q |
406 |
ggaatccacgagattgtatcctgcgattgaccattgtttggtgttgtggacagtggggcggttcaccttgtttccttgtggttggtctgtg |
496 |
Q |
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| T |
6354847 |
ggaatccacgagattgtatcctgcgattgaccattgtttggtgttgtggacagtggggcggttcaccttgtttccttgtggttggtctgtg |
6354937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 6354463 - 6354491
Alignment:
| Q |
18 |
gttactagaatctttgcattgatttcggg |
46 |
Q |
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| T |
6354463 |
gttactagaatctttgcattgatttcggg |
6354491 |
T |
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