View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13134_high_6 (Length: 377)
Name: NF13134_high_6
Description: NF13134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13134_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 43315992 - 43316353
Alignment:
| Q |
1 |
cagaatcatcaaattttaaaataataatcattattctaataaattaaatattaaaggacaaacttctgacacacttgatgaacatatgagacaaaggtta |
100 |
Q |
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| T |
43315992 |
cagaatcatcaaattttaaaataataatcattattctaataaattaaatattaaaggacaaacttctgacacacttgatgaacatatgagacaaaggtta |
43316091 |
T |
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| Q |
101 |
cgaattaaaaacaaagaacaaaggtgaaattgaaaaagtggtaataattacttggaaaaagcctaagaacttcttaaattcnnnnnnntagaaagaccat |
200 |
Q |
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| T |
43316092 |
cgaattaaaaacaaagaacaaaggtgaaattgaaaaagtggtaataattacttggaaaaagcctaagaacttcttaaattcaaaaaaatagaaagaccat |
43316191 |
T |
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| Q |
201 |
caataattagcctacaaagtacaaaggaacataataattcctagttttccatgcttaaattttaagtannnnnnnacaaattat-nnnnnnnnnnnnnnc |
299 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| | |
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| T |
43316192 |
caataattaccctacaaagtacaaaggaacataataattcctagttttccatgcttaaattttaagtatttttttacaaattataaaaaaaataaaaaac |
43316291 |
T |
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| Q |
300 |
ctctttgttcaaagttggaataggaacctttcagtaacacccttttaggccctggtgaaaat |
361 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43316292 |
ctctttgttcaaagttggaataggaacctttcagtaacacccttttaggccctggtgaaaat |
43316353 |
T |
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