View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13134_low_11 (Length: 250)

Name: NF13134_low_11
Description: NF13134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13134_low_11
NF13134_low_11
[»] chr8 (10 HSPs)
chr8 (8-250)||(9133507-9133749)
chr8 (24-81)||(5978726-5978783)
chr8 (25-81)||(31226676-31226732)
chr8 (21-80)||(18806775-18806834)
chr8 (21-81)||(5139878-5139941)
chr8 (21-81)||(5536001-5536061)
chr8 (23-81)||(35468189-35468247)
chr8 (30-81)||(37673978-37674029)
chr8 (30-79)||(6519259-6519308)
chr8 (21-81)||(30905747-30905807)
[»] chr4 (10 HSPs)
chr4 (21-81)||(35332191-35332251)
chr4 (21-81)||(43968638-43968698)
chr4 (27-81)||(45832424-45832478)
chr4 (30-81)||(35382580-35382631)
chr4 (27-81)||(2396164-2396218)
chr4 (23-61)||(45081635-45081673)
chr4 (16-81)||(8824822-8824887)
chr4 (183-216)||(12673626-12673659)
chr4 (30-66)||(25436118-25436154)
chr4 (30-70)||(38865397-38865437)
[»] chr3 (3 HSPs)
chr3 (21-80)||(46006285-46006344)
chr3 (16-81)||(30595264-30595329)
chr3 (23-68)||(22909229-22909274)
[»] chr6 (3 HSPs)
chr6 (23-81)||(5002578-5002636)
chr6 (43-79)||(32658635-32658671)
chr6 (21-81)||(32977565-32977625)
[»] chr2 (2 HSPs)
chr2 (25-79)||(6711084-6711138)
chr2 (25-81)||(11921800-11921856)
[»] chr1 (6 HSPs)
chr1 (23-81)||(24555975-24556033)
chr1 (23-81)||(32451968-32452026)
chr1 (31-81)||(47783871-47783921)
chr1 (25-81)||(11120426-11120482)
chr1 (183-250)||(24575414-24575481)
chr1 (21-81)||(43822650-43822710)
[»] chr7 (4 HSPs)
chr7 (25-81)||(43302331-43302387)
chr7 (183-250)||(17025956-17026023)
chr7 (183-250)||(18740818-18740885)
chr7 (22-60)||(19987037-19987075)


Alignment Details
Target: chr8 (Bit Score: 172; Significance: 2e-92; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 9133749 - 9133507
Alignment:
Q  8 agattattctcactgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtctgaggtctaaagnnnnnnnnngcaggg 107  Q
    ||||| |||||| ||| |||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||          ||||||    
T  9133749 agattcttctcattggaggtacctaataggtaccgggtcttaaatagttaagaccctcccaatagagatggtctgaggtctaaataaaacaaaagcaggg 9133650  T
Q  108 ctgtcaaatgcaattatcatatgagtattggtgcaagtttttatattttagggcacattggatttgcctttagactcgagtagacgagttgaacctaaca 207  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9133649 ctgtcaaatgcaattatcatatgagtattggtgcaattttttatattttagggcacattggatttgcctttagactcgagtagacgagttgaacctaaca 9133550  T
Q  208 agtcgaaccaggttgctagtaaactttaaacgaatcgaactcg 250  Q
    ||||||||| | |||||| |||||||||||||| |||||||||    
T  9133549 agtcgaaccggattgctaataaactttaaacgagtcgaactcg 9133507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 24 - 81
Target Start/End: Original strand, 5978726 - 5978783
Alignment:
Q  24 gggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||| ||||||||||    
T  5978726 gggtacctaataggtaccaggtcttaaatagttaagaccctctcaatggagatggtct 5978783  T

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Target: chr8; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 31226676 - 31226732
Alignment:
Q  25 ggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||    
T  31226676 ggtatctaataggtactgggtcttaaatagttaagaccctcctaatagagatggtct 31226732  T

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Target: chr8; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 18806775 - 18806834
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtc 80  Q
    |||||||| |||||| ||||||||||||||||||||||||| |||||||| |||||||||    
T  18806775 tgggggtacctaatatgtaccaggtcttaaatagttaagactctcccaatggagatggtc 18806834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 5139878 - 5139941
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaa---tagttaagaccctcccaatagagatggtct 81  Q
    ||||||||||||||||||||| |||||||||   ||||||||||||||||||| | ||||||||    
T  5139878 tgggggtatctaataggtaccgggtcttaaatagtagttaagaccctcccaatggtgatggtct 5139941  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 5536001 - 5536061
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||| || ||||||||||||  ||||||||||||||||||||| ||||| ||||||||||    
T  5536001 tggggatacctaataggtaccgtgtcttaaatagttaagacccttccaatggagatggtct 5536061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 81
Target Start/End: Complemental strand, 35468247 - 35468189
Alignment:
Q  23 ggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||| |||||||||||| ||||||||||  |||||||||||||| | ||||||||||    
T  35468247 ggggtacctaataggtaccgggtcttaaatgtttaagaccctcccattggagatggtct 35468189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 37673978 - 37674029
Alignment:
Q  30 ctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||||||||||  |||||||||  |||||||||||||| ||||||||||||    
T  37673978 ctaataggtaccgagtcttaaatgtttaagaccctcccattagagatggtct 37674029  T

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Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 79
Target Start/End: Original strand, 6519259 - 6519308
Alignment:
Q  30 ctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggt 79  Q
    |||||||||||| |||||||||| |||||||| |||||| | ||||||||    
T  6519259 ctaataggtaccgggtcttaaatggttaagactctcccattggagatggt 6519308  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 30905747 - 30905807
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||||| ||| |||||| ||| |||||||||||||||||||| ||| ||  ||||||||    
T  30905747 tgggggtacctattaggtatcagctcttaaatagttaagaccctaccattatggatggtct 30905807  T

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Target: chr4 (Bit Score: 45; Significance: 9e-17; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 35332191 - 35332251
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||||| |||||||||||| |||||||||||||||||||||||||| | ||||||||||    
T  35332191 tgggggtacctaataggtaccgggtcttaaatagttaagaccctcccattggagatggtct 35332251  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 43968698 - 43968638
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||||| ||||||||| || |||||||||||||||||||||||||||| ||||||||||    
T  43968698 tgggggtacctaataggttccgggtcttaaatagttaagaccctcccaatggagatggtct 43968638  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 45832478 - 45832424
Alignment:
Q  27 tatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||||||||||| | ||||||||||||| ||||||||| |||| ||||||||||    
T  45832478 tatctaataggtatcgggtcttaaatagtaaagaccctctcaatggagatggtct 45832424  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 35382580 - 35382631
Alignment:
Q  30 ctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||||| |||  ||||||||||||||||||||||||||||  |||||||||    
T  35382580 ctaatagttactgggtcttaaatagttaagaccctcccaatgaagatggtct 35382631  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 81
Target Start/End: Complemental strand, 2396218 - 2396164
Alignment:
Q  27 tatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||||||||||||| |||||||||| ||||||| ||||||| |  |||||||||    
T  2396218 tatctaataggtaccgggtcttaaatggttaagaacctcccattgaagatggtct 2396164  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 61
Target Start/End: Original strand, 45081635 - 45081673
Alignment:
Q  23 ggggtatctaataggtaccaggtcttaaatagttaagac 61  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  45081635 ggggtatctaataggtaccagatcttaaatggttaagac 45081673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 8824887 - 8824822
Alignment:
Q  16 ctcactgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||||| | || |||||||||||| | ||||||||||||||||| ||  |||| ||||||||||    
T  8824887 ctcactggagatacctaataggtaccggatcttaaatagttaagactctttcaatggagatggtct 8824822  T

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Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 183 - 216
Target Start/End: Original strand, 12673626 - 12673659
Alignment:
Q  183 tcgagtagacgagttgaacctaacaagtcgaacc 216  Q
    |||||||||||||||||||||||| |||||||||    
T  12673626 tcgagtagacgagttgaacctaacgagtcgaacc 12673659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 66
Target Start/End: Original strand, 25436118 - 25436154
Alignment:
Q  30 ctaataggtaccaggtcttaaatagttaagaccctcc 66  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  25436118 ctaatagataccaggtcttaaatatttaagaccctcc 25436154  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 70
Target Start/End: Original strand, 38865397 - 38865437
Alignment:
Q  30 ctaataggtaccaggtcttaaatagttaagaccctcccaat 70  Q
    |||| ||||| ||| ||||||||||||||||||||||||||    
T  38865397 ctaacaggtatcagatcttaaatagttaagaccctcccaat 38865437  T

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Target: chr3 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 21 - 80
Target Start/End: Original strand, 46006285 - 46006344
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtc 80  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||||||| |||||||||    
T  46006285 tgggggtacctaatagttacggggtcttaaatagttaagaccctcccaatggagatggtc 46006344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 81
Target Start/End: Original strand, 30595264 - 30595329
Alignment:
Q  16 ctcactgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||| |||||||| ||||||||||| ||||||||||| |||||||||||| || | ||||||||||    
T  30595264 ctcaatgggggtacctaataggtacaaggtcttaaatggttaagaccctcacattggagatggtct 30595329  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 22909274 - 22909229
Alignment:
Q  23 ggggtatctaataggtaccaggtcttaaatagttaagaccctccca 68  Q
    |||| ||||| |||||||||||||||||||| ||||||| ||||||    
T  22909274 ggggcatctattaggtaccaggtcttaaatatttaagactctccca 22909229  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 5002578 - 5002636
Alignment:
Q  23 ggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||| |||||||||||| | |||||||||||||||||||| ||||| ||||||||||    
T  5002578 ggggtacctaataggtaccggatcttaaatagttaagacccttccaatggagatggtct 5002636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 43 - 79
Target Start/End: Original strand, 32658635 - 32658671
Alignment:
Q  43 ggtcttaaatagttaagaccctcccaatagagatggt 79  Q
    ||||||||||||||||||| |||||||||||||||||    
T  32658635 ggtcttaaatagttaagactctcccaatagagatggt 32658671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Original strand, 32977565 - 32977625
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||||| |||||||||||| ||||||||||   ||||||||| ||| | ||||||||||    
T  32977565 tgggggtacctaataggtaccgggtcttaaatgtctaagaccctaccattggagatggtct 32977625  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 79
Target Start/End: Original strand, 6711084 - 6711138
Alignment:
Q  25 ggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggt 79  Q
    |||| ||||||| ||||| ||||| ||||||||||||||||||||| ||||||||    
T  6711084 ggtacctaatagataccatgtcttgaatagttaagaccctcccaatggagatggt 6711138  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 11921856 - 11921800
Alignment:
Q  25 ggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||| |||||||||| | ||||||||||  |||||||||||||| | ||||||||||    
T  11921856 ggtacctaataggtatcgggtcttaaatgtttaagaccctcccattggagatggtct 11921800  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 24555975 - 24556033
Alignment:
Q  23 ggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||| |||||||||| | |||||||||||||||||||||  ||||| ||||||||||    
T  24555975 ggggtacctaataggtaacgggtcttaaatagttaagacccatccaatggagatggtct 24556033  T

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Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 23 - 81
Target Start/End: Original strand, 32451968 - 32452026
Alignment:
Q  23 ggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||| |||||| ||||| |||||||||||||||||||||||  ||| ||||||||||    
T  32451968 ggggtacctaatatgtaccgggtcttaaatagttaagaccctcataatggagatggtct 32452026  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 31 - 81
Target Start/End: Original strand, 47783871 - 47783921
Alignment:
Q  31 taataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    ||||||||||  ||||||||||||||||||| |||||||| ||||||||||    
T  47783871 taataggtactgggtcttaaatagttaagactctcccaatggagatggtct 47783921  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Complemental strand, 11120482 - 11120426
Alignment:
Q  25 ggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||| ||||||||||||  || ||||| |||||||||||||||||| ||||||||||    
T  11120482 ggtacctaataggtaccgagttttaaaaagttaagaccctcccaatggagatggtct 11120426  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Complemental strand, 24575481 - 24575414
Alignment:
Q  183 tcgagtagacgagttgaacctaacaagtcgaaccaggttgctagtaaactttaaacgaatcgaactcg 250  Q
    |||||||||||||||||||||||| || ||||||  |||| | || ||||||||||||  ||||||||    
T  24575481 tcgagtagacgagttgaacctaacgagccgaaccgagttgttcgtgaactttaaacgagccgaactcg 24575414  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 81
Target Start/End: Complemental strand, 43822710 - 43822650
Alignment:
Q  21 tgggggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||||||| |||||||||||| ||||||||||   ||||||||| ||| | ||||||||||    
T  43822710 tgggggtacctaataggtaccgggtcttaaatgtctaagacccttccattggagatggtct 43822650  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 25 - 81
Target Start/End: Original strand, 43302331 - 43302387
Alignment:
Q  25 ggtatctaataggtaccaggtcttaaatagttaagaccctcccaatagagatggtct 81  Q
    |||| ||||||| ||| ||||||||||||||||||| |||||||||  |||||||||    
T  43302331 ggtacctaatagttactaggtcttaaatagttaagatcctcccaatgaagatggtct 43302387  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 17025956 - 17026023
Alignment:
Q  183 tcgagtagacgagttgaacctaacaagtcgaaccaggttgctagtaaactttaaacgaatcgaactcg 250  Q
    |||||||||||||||||||||||| |||||||||  |||| | |  ||||||||||||  ||||||||    
T  17025956 tcgagtagacgagttgaacctaacgagtcgaaccgagttgttcgcgaactttaaacgagccgaactcg 17026023  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 183 - 250
Target Start/End: Original strand, 18740818 - 18740885
Alignment:
Q  183 tcgagtagacgagttgaacctaacaagtcgaaccaggttgctagtaaactttaaacgaatcgaactcg 250  Q
    |||||||||||| ||||||||||| || ||||||  |||| | || |||||||||||| |||||||||    
T  18740818 tcgagtagacgaattgaacctaacgagccgaaccgagttgttcgtgaactttaaacgagtcgaactcg 18740885  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 60
Target Start/End: Complemental strand, 19987075 - 19987037
Alignment:
Q  22 gggggtatctaataggtaccaggtcttaaatagttaaga 60  Q
    ||||||| ||||||||||| |||||||||||||||||||    
T  19987075 gggggtacctaataggtactaggtcttaaatagttaaga 19987037  T

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