View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13134_low_4 (Length: 442)
Name: NF13134_low_4
Description: NF13134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13134_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 403; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 7161663 - 7161237
Alignment:
| Q |
1 |
tcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggcttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161663 |
tcatcatcttcctcctccatcactcctggagattcacttcaccaacagcctcttcccagtcttacgtttgacatcgtggctgaaattctttccaggcttc |
7161564 |
T |
|
| Q |
101 |
cagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaaccac |
200 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161563 |
cagtcaaatccctcatgcaactcaaatcggtctgcaaatcctggaaatatcttatttcagattcaaatttcgccaagaaccactttcgcgtttcaaccac |
7161464 |
T |
|
| Q |
201 |
gcgccaccatcttgtctcagataaaaccaaaccctcactcaagtattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttgcag |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161463 |
gcgccaccatcttgtctcagataaaaccaaaccctcactcaattattaccctctctcctccgttttcacagaaatcacccctaccaccactcccttgcag |
7161364 |
T |
|
| Q |
301 |
ctacagttccctctaaacaatcaaagttgggatcacttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgtgga |
400 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7161363 |
ctacagttccctctaaacgatcaaagttgggatcgcttcattggttcatgccgcggcatcctctgtttcagtctcggtaaagctccccctcttgtgtgga |
7161264 |
T |
|
| Q |
401 |
atccttccattcataaatttactaaat |
427 |
Q |
| |
|
||||||||||||| ||||||||||||| |
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| T |
7161263 |
atccttccattcagaaatttactaaat |
7161237 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 76 - 213
Target Start/End: Complemental strand, 7169530 - 7169393
Alignment:
| Q |
76 |
gtggctgaaattctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgcca |
175 |
Q |
| |
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||||| |||||||| ||||||||||||||||| | |||||||||||| |||| ||||| || ||||||||||||||||| || |||||||| ||||| | |
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| T |
7169530 |
gtggcggaaattctctccaggcttccagtcaagtttctcatgcaactccaatccgtctgtaagtcctggaaatctcttatctccgattcaaaattcgcta |
7169431 |
T |
|
| Q |
176 |
agaaccactttcgcgtttcaaccacgcgccaccatctt |
213 |
Q |
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|||| ||| ||||| | |||||||||| ||||| |||| |
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| T |
7169430 |
agaatcaccttcgcttgtcaaccacgctccaccgtctt |
7169393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 93 - 201
Target Start/End: Complemental strand, 7175163 - 7175055
Alignment:
| Q |
93 |
caggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccactttcgcgtt |
192 |
Q |
| |
|
|||||||||||||||||||||| || | |||||||||| |||||||||||||||||| || ||||||||||||||| ||||||| || ||||||| |
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| T |
7175163 |
caggcttccagtcaaatccctcgcacagtttaaatctgtctccaaatcctggaaatctctcatctcagattcaaatttcaccaagaagaaccttcgcgtg |
7175064 |
T |
|
| Q |
193 |
tcaaccacg |
201 |
Q |
| |
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||||||||| |
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|
| T |
7175063 |
tcaaccacg |
7175055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 85 - 217
Target Start/End: Original strand, 11236913 - 11237045
Alignment:
| Q |
85 |
attctttccaggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatctcttatttcagattcaaatttcgccaagaaccact |
184 |
Q |
| |
|
||||| |||||||| |||||||||| ||||||||||||| |||| ||||| || |||||||||||||| || || ||| | || ||| ||| || ||| |
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| T |
11236913 |
attctctccaggctgccagtcaaatacctcatgcaactccaatccgtctgtaagtcctggaaatctctcatctccgatcccaaattcatcaaaaaacacc |
11237012 |
T |
|
| Q |
185 |
ttcgcgtttcaaccacgcgccaccatcttgtct |
217 |
Q |
| |
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||| ||| || |||||||||| |||||| |||| |
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|
| T |
11237013 |
ttcacgtgtccaccacgcgcctccatctcgtct |
11237045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 149
Target Start/End: Original strand, 24722586 - 24722641
Alignment:
| Q |
94 |
aggcttccagtcaaatccctcatgcaactcaaatctgtctgcaaatcctggaaatc |
149 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||||| ||||||||| ||||||||||| |
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|
| T |
24722586 |
aggcttccggtcaagtccctcatgcaattcaaatgtgtctgcaagtcctggaaatc |
24722641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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