View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13134_low_5 (Length: 425)
Name: NF13134_low_5
Description: NF13134
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13134_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 11 - 183
Target Start/End: Original strand, 12957561 - 12957733
Alignment:
| Q |
11 |
caaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatacctctccaaaaccatt |
110 |
Q |
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| T |
12957561 |
caaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatacctctccaaaaccatt |
12957660 |
T |
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| Q |
111 |
gtcccagaaggatggaccaattggagttatgatggtagcactgagtaagaacattatcatttatcaccaattc |
183 |
Q |
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| T |
12957661 |
gtcccagaaggatggaccaattggagttatgatggtagcactgagtaagaacattatcatttatcaccaattc |
12957733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 250 - 407
Target Start/End: Original strand, 12957837 - 12957994
Alignment:
| Q |
250 |
ctatagacatctttaccatgcggagtataaatgccatggacctggagccatagcagagaaaagagcttcttggtcaaggcaacttagtgatgaagaagct |
349 |
Q |
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| T |
12957837 |
ctatagacatctttaccatgcggagtataaatgccatggacctggagccatagcagagaaaagagcttcttggtcaaggcaacttagtgatgaagaagct |
12957936 |
T |
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| Q |
350 |
gctccatttatatctattgattacattgatggcaagaattggttaccagcatggctat |
407 |
Q |
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| T |
12957937 |
gctccatttatatctattgattacattgatggcaagaattggttaccagcatggctat |
12957994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 5e-66
Query Start/End: Original strand, 11 - 173
Target Start/End: Complemental strand, 14241392 - 14241229
Alignment:
| Q |
11 |
caaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatacctctccaaaaccatt |
110 |
Q |
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| T |
14241392 |
caaaggcaaagtttatggcattggtggtgtgtacttaggaagggctaaaggtccttattctagggtcatttttgctaagacatacctcttcaaaaccgtt |
14241293 |
T |
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| Q |
111 |
gtcccag-aaggatggaccaattggagttatgatggtagcactgagtaagaacattatcattta |
173 |
Q |
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| T |
14241292 |
gttccagaaaggatggaccaattggagttatgacggtagcacagaataagagcattatcattta |
14241229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 251 - 399
Target Start/End: Complemental strand, 14241164 - 14241016
Alignment:
| Q |
251 |
tatagacatctttaccatgcggagtataaatgccatggacctggagccatagcagagaaaagagcttcttggtcaaggcaacttagtgatgaagaagctg |
350 |
Q |
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| T |
14241164 |
tatagacatctttaccatgcggagtataaatgtcatggacctggagccacaacacagggaagagcttcttggtcaaggcagcttagtgatgaagaagctg |
14241065 |
T |
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| Q |
351 |
ctccatttatatctattgattacattgatggcaagaattggttaccagc |
399 |
Q |
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| T |
14241064 |
ctccatttatatctattgattacattgatggcaagaattggttaccagc |
14241016 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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