View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13136_high_5 (Length: 534)

Name: NF13136_high_5
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13136_high_5
NF13136_high_5
[»] chr4 (14 HSPs)
chr4 (23-514)||(35252923-35253414)
chr4 (66-510)||(35270789-35271242)
chr4 (286-507)||(35240679-35240900)
chr4 (60-511)||(35246301-35246773)
chr4 (65-159)||(35241041-35241135)
chr4 (59-171)||(35283327-35283439)
chr4 (227-513)||(35286490-35286784)
chr4 (59-171)||(35277813-35277928)
chr4 (398-513)||(35277439-35277554)
chr4 (68-159)||(35286869-35286963)
chr4 (410-513)||(35282986-35283089)
chr4 (397-484)||(35237675-35237762)
chr4 (382-428)||(35275093-35275139)
chr4 (1-30)||(35253429-35253458)


Alignment Details
Target: chr4 (Bit Score: 444; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 23 - 514
Target Start/End: Complemental strand, 35253414 - 35252923
Alignment:
Q  23 aaactcatcttttatagtattcaaaacagaatcacggagtaaaatgacttgtataaaaatgaatttcagacaggaagcctagtgagatttcagcctggat 122  Q
    |||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  35253414 aaactcatcttttaaagtattcaaaacagaatcacagagtaaaatgacttgtataaaaatgaatttcaggcaggaagcctagtgagatttcagcctggat 35253315  T
Q  123 cagggaagcttttggcagttgctaatcgaaatgttattaccataattgatactccgactatggttgttattgaccaacttcaggtgagcttcacatatca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35253314 cagggaagcttttggcagttgctaatcgaaatgttattaccataattgatactccgactatggttgttattgaccaacttcaggtgagcttcacatatca 35253215  T
Q  223 tatataagttgtgtatcatgactctattattactgcaccatgactctgattctcattcgatattagggacacgtcaaagacatcaattccatatgtttgg 322  Q
    |||||||||||||||||||||  |||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35253214 tatataagttgtgtatcatgatactattattactgcaccgtgtctctgattctcattcgatattagggacacgtcaaagacatcaattccatatgtttgg 35253115  T
Q  323 atgtcactggaaatatgattgcctctgtcagtgaagatgaagtacgtgtctggtcggacagacgatgcatattcgagtatcaatcaaacgggaagatgtt 422  Q
    | |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  35253114 acgtcactgggaatatgattgcctctgtcagtgaagatgaagtacgtgtctggtcggacagacgatgcatattcgagtatcaatcaaacgggaagaggtt 35253015  T
Q  423 tcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcatt 514  Q
    ||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35253014 tcagtctgtcatattccatcctcgataccctaacgtcttagttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcatt 35252923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 66 - 510
Target Start/End: Complemental strand, 35271242 - 35270789
Alignment:
Q  66 atgacttgtataaaaatgaatttcagacagg---aagcctagtgagatttcagcctggatcagggaagcttttggcagttgctaatcgaaatgttattac 162  Q
    |||||||||||||| |||||||||||  |||   ||| | ||||||||||||||||||||| |||| | |||||||||||||||||| ||||||||| ||    
T  35271242 atgacttgtataaacatgaatttcaggaaggtggaaggcaagtgagatttcagcctggatctgggacgtttttggcagttgctaatcaaaatgttataac 35271143  T
Q  163 cataattgatactccgactatggttgttattgaccaacttcaggtgagcttcacatatcatatataagttgtgtatcatgactctattattactgcacca 262  Q
    |||| || |||||| |  | ||  |||| |  || || |||||||||||||||||||||||||||||| ||||||||||||| | | ||||||| |||||    
T  35271142 catatttaatactcaggatttgagtgttttccacaaatttcaggtgagcttcacatatcatatataagctgtgtatcatgacaccagtattacttcacca 35271043  T
Q  263 tgactctgattctcattcgatattagggacacgtcaaagacatcaattccatatgtttggatgtcactggaaatatgattgcctctgtcagtgaagatga 362  Q
    ||| ||||| ||||||||   ||||||||||||||||||| || || || ||||||| ||||| |||||| |||||||||||||||||||||||||||||    
T  35271042 tgaatctgaatctcattcctaattagggacacgtcaaagaaattaagtctatatgttgggatgccactgggaatatgattgcctctgtcagtgaagatga 35270943  T
Q  363 agtacgtgtctggtcgg-----acagacga-tgcatattcgagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaat 456  Q
     |||||||| | ||| |     |   | || | |||||  ||||||| |||||| ||||||| ||||||||| ||||||||||||||||||||||||||     
T  35270942 tgtacgtgttttgtcagtttttatgaaagagtccatatatgagtatccatcaaatgggaagaggtttcagtccgtcatattccatcctcgataccctaac 35270843  T
Q  457 gtgttagttgttgctggttttcaggtaaacacttccctgcgcttctattatgat 510  Q
    || |||||| ||| | |||||||||||||||||||||| |||||| ||||||||    
T  35270842 gtcttagttattggttgttttcaggtaaacacttccctccgcttccattatgat 35270789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 286 - 507
Target Start/End: Complemental strand, 35240900 - 35240679
Alignment:
Q  286 tagggacacgtcaaagacatcaattccatatgtttggatgtcactggaaatatgattgcctctgtcagtgaagatgaagtacgtgtctggtcggacagac 385  Q
    ||||| |||||||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||    
T  35240900 tagggtcacgtcaaagacataaattccatatgttgggatgtcactgggaatatgattgcctctgtcagtgaagatgatgtacgtgtctggtcggacggac 35240801  T
Q  386 gatgcatattcgagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaa 485  Q
     |||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||||||| ||| | || ||||||||||||||||||||||||||    
T  35240800 aatgcatattcgagtatcaatcagacgggaagaggtttcagtctatcatattccatcctcgatatcctgacgtcttagttgttgctggttttcaggtaaa 35240701  T
Q  486 cacttccctgcgcttctattat 507  Q
    | |||||||  |||||||||||    
T  35240700 ctcttccctctgcttctattat 35240679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 60 - 511
Target Start/End: Complemental strand, 35246773 - 35246301
Alignment:
Q  60 agtaaaatgacttgtataaaaatgaatttcagacagg---aagcctagtgagatttcagcctggatcagggaagcttttggcagttgctaatcgaaatgt 156  Q
    |||| ||||||||||||||||||||||| ||| ||||   ||||||||||||||||||||||||||| |||| || ||||||||||||||||| ||||||    
T  35246773 agtacaatgacttgtataaaaatgaattgcaggcaggtggaagcctagtgagatttcagcctggatctgggaggcatttggcagttgctaatcaaaatgt 35246674  T
Q  157 tattaccataattgatactccgactatggttgttattgaccaa-cttcaggtgagcttcacatatcatatataagttgtgtatcatgactctattattac 255  Q
    ||| ||||||  ||||     |  |     ||||   || ||| ||||||||||| |||| ||||| ||||||||||||| |||||| | ||| ||||||    
T  35246673 tatcaccatacatgatttaaaggatcccaatgtt-cggatcaatcttcaggtgagtttcaaatatcgtatataagttgtgaatcatggcactagtattac 35246575  T
Q  256 tgcaccat---------gactctgattctcattcgatattagggacacgtcaaagacatcaattccatatgtttggatgtcactggaaatatgattgcct 346  Q
    ||||| ||          ||||||| |||| |||  ||||||||||||  |||||||||| ||||||| |||| |||||||||||| || ||||||||||    
T  35246574 tgcacaattctgtctgaaactctgaatctcgttccctattagggacacaccaaagacatctattccatgtgttgggatgtcactggtaaaatgattgcct 35246475  T
Q  347 ctgtcagtgaagatgaagtacgtgtctggtc---------ggacagacgatgcatattcgagtatcaatcaaacgggaagatgtttcagtctgtcatatt 437  Q
    |||||| ||||||||| |||||||| |||||         ||  | || |||||| |   |||||| |||||| ||||| | ||||||||||||||||||    
T  35246474 ctgtcactgaagatgatgtacgtgtttggtcggtttttatggtgaaacaatgcatgtataagtatccatcaaatgggaacaggtttcagtctgtcatatt 35246375  T
Q  438 ccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcgcttctattatgatc 511  Q
    ||||||||||||||||   || |||||| ||| ||||||||||||||| |||| |||  ||| |||||||||||    
T  35246374 ccatcctcgataccctggcgtcttagttattggtggttttcaggtaaatactttcctctgctactattatgatc 35246301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 65 - 159
Target Start/End: Complemental strand, 35241135 - 35241041
Alignment:
Q  65 aatgacttgtataaaaatgaatttcagacaggaagcctagtgagatttcagcctggatcagggaagcttttggcagttgctaatcgaaatgttat 159  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||    
T  35241135 aatgacttgtataaaaatgaatttcaggcaggaagcctagtgagatttcagcctggatcagggaagcttttggcagtagctaatcaaaatgttat 35241041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 35283439 - 35283327
Alignment:
Q  59 gagtaaaatgacttgtataaaaatgaatttcagacaggaagcctagtgagatttcagcctggatcagggaagcttttggcagttgctaatcgaaatgtta 158  Q
    ||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  35283439 gagtacaatgacttatgtaaaaatgaatttcaggcaggaagcctagtgagatttcagcctggatcagggaagcttttggcagtcgctaatcaaaatgtta 35283340  T
Q  159 ttaccataattga 171  Q
    | |||||| ||||    
T  35283339 tcaccatacttga 35283327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 227 - 513
Target Start/End: Complemental strand, 35286784 - 35286490
Alignment:
Q  227 taagttgtgtatcatgactctattattactgcaccatgactctgattctcattcgatattagggacacgtcaaagacatcaattccatatgtttggatgt 326  Q
    |||||||||||||||||   || ||||||| || ||||| ||||| ||||||||  |||||||| ||||||||| | ||   |||| |||||| ||||||    
T  35286784 taagttgtgtatcatgaaa-tagtattactacagcatgagtctgaatctcattccctattagggccacgtcaaatatatttgttccttatgttgggatgt 35286686  T
Q  327 cactggaaatatgattgcctctgtcagtgaagatgaagtacgtgtctggtcg---------gacagacgatgcatattcgagtatcaatcaaacgggaag 417  Q
    ||||||  | ||||| ||||||||||||| |||||  |||||||||||| ||         ||| |||  ||| |||  ||||||| ||| || ||||||    
T  35286685 cactgggcaaatgatcgcctctgtcagtgcagatggtgtacgtgtctggacgctttctatggacggacagtgcttatatgagtatccatcgaaagggaag 35286586  T
Q  418 atgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcgcttctattatgatcat 513  Q
    ||||||  ||| |||||||||||||||||||||| ||| || |||||||||| |||||||||||||||| |||||||| ||||| |||||| ||||    
T  35286585 atgtttatgtccgtcatattccatcctcgataccgtaacgtcttagttgttggtggttttcaggtaaactcttccctgtgcttccattatgttcat 35286490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 59 - 171
Target Start/End: Complemental strand, 35277928 - 35277813
Alignment:
Q  59 gagtaaaatgacttgtataaaaatgaatttcagacagg---aagcctagtgagatttcagcctggatcagggaagcttttggcagttgctaatcgaaatg 155  Q
    ||||| |||||||||||||||||||||||||||  |||   | ||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  35277928 gagtacaatgacttgtataaaaatgaatttcaggaaggtggatgcccagtgagatttcagcctggatctgggaagcttttggcagttgctaatcaaaatg 35277829  T
Q  156 ttattaccataattga 171  Q
    || |||||||| ||||    
T  35277828 ttgttaccatacttga 35277813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 398 - 513
Target Start/End: Complemental strand, 35277554 - 35277439
Alignment:
Q  398 agtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcg 497  Q
    |||||| |||||||||||| |  |||||||| |||||||||||||||| ||||| |||||| ||||||||||  ||||||||||||||| |||||||  |    
T  35277554 agtatccatcaaacgggaataattttcagtcggtcatattccatcctcaataccgtaatgtcttagttgttggcggttttcaggtaaactcttccctctg 35277455  T
Q  498 cttctattatgatcat 513  Q
    |||| |||||||||||    
T  35277454 cttccattatgatcat 35277439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 68 - 159
Target Start/End: Complemental strand, 35286963 - 35286869
Alignment:
Q  68 gacttgtataaaaatgaatttcagacagg---aagcctagtgagatttcagcctggatcagggaagcttttggcagttgctaatcgaaatgttat 159  Q
    ||||| |||||||||||||||||| ||||   | ||| ||||||||||||||||| ||| |||| |||||||||||||||||||| |||||||||    
T  35286963 gacttatataaaaatgaatttcaggcaggtgtaggccaagtgagatttcagcctgtatctgggatgcttttggcagttgctaatcaaaatgttat 35286869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 410 - 513
Target Start/End: Complemental strand, 35283089 - 35282986
Alignment:
Q  410 acgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaaacacttccctgcgcttctattatga 509  Q
    ||||||||| |||||||||||||||||||||||||||| ||| ||| || ||||||||   ||| |||||||||||| ||| |||  ||||| |||||||    
T  35283089 acgggaagaggtttcagtctgtcatattccatcctcgacaccgtaacgtcttagttgtgagtggatttcaggtaaactctttcctcagcttccattatga 35282990  T
Q  510 tcat 513  Q
    ||||    
T  35282989 tcat 35282986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 397 - 484
Target Start/End: Complemental strand, 35237762 - 35237675
Alignment:
Q  397 gagtatcaatcaaacgggaagatgtttcagtctgtcatattccatcctcgataccctaatgtgttagttgttgctggttttcaggtaa 484  Q
    |||||||||||||| ||||||| |||||||||  |||| ||||||||| ||||||||||||   ||||| ||| ||| ||||||||||    
T  35237762 gagtatcaatcaaatgggaagaggtttcagtccatcatcttccatcctagataccctaatgcactagttattggtggatttcaggtaa 35237675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 382 - 428
Target Start/End: Complemental strand, 35275139 - 35275093
Alignment:
Q  382 agacgatgcatattcgagtatcaatcaaacgggaagatgtttcagtc 428  Q
    ||||||||||||| |||||||| |||||| ||||||| |||||||||    
T  35275139 agacgatgcatatacgagtatccatcaaatgggaagaggtttcagtc 35275093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 35253458 - 35253429
Alignment:
Q  1 taacgaatttaaggttagtcttaaactcat 30  Q
    ||||||||||||||||||||||||||||||    
T  35253458 taacgaatttaaggttagtcttaaactcat 35253429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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