View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_10 (Length: 400)
Name: NF13136_low_10
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 307; Significance: 1e-173; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 10 - 382
Target Start/End: Complemental strand, 35703430 - 35703042
Alignment:
| Q |
10 |
aattctgcactaaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatgg |
109 |
Q |
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| T |
35703430 |
aattctgcactaaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatgg |
35703331 |
T |
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| Q |
110 |
tcaccatcagataagttggtaccgccaaagcccagtatctgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcact |
209 |
Q |
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| T |
35703330 |
tcaccatcagataagttggtaccgccaaagcccagtatctgaaaagcataagtagttttcaatgcacaagtagttaaatcgctaaatggaagagctcact |
35703231 |
T |
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| Q |
210 |
acacctgcttcatacaccttagttgagtttacatttacaaaattaaattaaa-----ttaaggcaccataattcttc-----------ttcttgtttttg |
293 |
Q |
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| T |
35703230 |
acacctgcttcatacaccttagttgagtttacatttacaaaattaaattaaattaaattaaggcaccagaattcttctcactttagatttcttatttttg |
35703131 |
T |
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| Q |
294 |
tgcgaccaaacaattacatacagcagaagatctgcatggttgcaaaagcttgaaatgataaaaggaattgaggtgtctaacctgctagg |
382 |
Q |
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| T |
35703130 |
tgcaaccaaacaattacatagagcagaagacctgcatggttgcaaaagcttcaaatgataaaaggaattgaggtgtctaacctgctagg |
35703042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 120; E-Value: 3e-61
Query Start/End: Original strand, 20 - 167
Target Start/End: Complemental strand, 7957149 - 7957002
Alignment:
| Q |
20 |
taaactcaccataaactgtgtttatggatgcaggagaaggtgttgacatgaagttaaggccaatgtagaataccaacattaatacaatggtcaccatcag |
119 |
Q |
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| T |
7957149 |
taaactcaccaaaaactgcgtttaaggatgcaggagatggtgttgacatgaagttaaggccaatgtagaatgccaacattaatacaatggtcaccatcac |
7957050 |
T |
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| Q |
120 |
ataagttggtaccgccaaagcccagtatctgaaaagcataagtagttt |
167 |
Q |
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| T |
7957049 |
ataagttggtactgccaaagcccagtatctgaaaagcataagtagttt |
7957002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 282 - 382
Target Start/End: Complemental strand, 7956881 - 7956781
Alignment:
| Q |
282 |
ttcttgtttttgtgcgaccaaacaattacatacagcagaagatctgcatggttgcaaaagcttgaaatgataaaaggaattgaggtgtctaacctgctag |
381 |
Q |
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|||||||||||||| ||||||||||||||||||| ||| || ||||||||||| ||||||| |||||||| |||||||||||||||||||||||||| |
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| T |
7956881 |
ttcttgtttttgtgacaccaaacaattacatacagtagaggacctgcatggttgataaagcttcaaatgatagcaggaattgaggtgtctaacctgctag |
7956782 |
T |
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| Q |
382 |
g |
382 |
Q |
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| T |
7956781 |
g |
7956781 |
T |
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