View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_11 (Length: 364)
Name: NF13136_low_11
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 325; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 18 - 354
Target Start/End: Original strand, 4128944 - 4129280
Alignment:
| Q |
18 |
gtttggagtgctaaaaacacgaacaacaacaacctcgtacaagcaccgacaggatcacaagttcagctaacatctggaggactcacgttgacaactcaac |
117 |
Q |
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| T |
4128944 |
gtttggagtgctaaaaacacgaacaacaacaacctcgtacaagcaccgacaggatcacaagttcagctaacatcaggaggactcacgttgacaactcaac |
4129043 |
T |
|
| Q |
118 |
aaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4129044 |
aaggtgaatccatttggacagcacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctat |
4129143 |
T |
|
| Q |
218 |
tgtttgggaaagtttcaagtttcccactgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagagaccaattac |
317 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
4129144 |
tgtttgggaaagtttcaagtttcccaccgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagagaccaactac |
4129243 |
T |
|
| Q |
318 |
acaagtgggaggttccaactttattttcgtgatgatg |
354 |
Q |
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| T |
4129244 |
acaagtgggaggttccaactttattttcgtgatgatg |
4129280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 39 - 354
Target Start/End: Original strand, 4105775 - 4106090
Alignment:
| Q |
39 |
aacaacaacaacctcgtacaagcaccgacaggatcacaagttcagctaacatctggaggactcacgttgacaactcaacaaggtgaatccatttggacag |
138 |
Q |
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|||| |||||||||||||| |||||| ||||||||||| |||||||||||||| || |||||||||||||||| || |||| ||||||||||||||||| |
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| T |
4105775 |
aacagcaacaacctcgtactagcaccaacaggatcacaggttcagctaacatcaggtggactcacgttgacaaatccacaaaatgaatccatttggacag |
4105874 |
T |
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| Q |
139 |
cacaaccaaacacagctgtttcctatggaatcatgcatgatactggaaactttgttcttgttaataagaattcttctattgtttgggaaagtttcaagtt |
238 |
Q |
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||||||||||| |||||||||||||| ||||| ||||| |||||||||||||||||| || || || ||| ||||||||||||||||||| ||||| |
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| T |
4105875 |
cacaaccaaacgatattgtttcctatggaaccatgcttgataatggaaactttgttcttgtaaacaacaaatctgctattgtttgggaaagttttaagtt |
4105974 |
T |
|
| Q |
239 |
tcccactgacacccttttgcctaatcaatctcttgaattaggtggaaacataacttctagattttcagagaccaattacacaagtgggaggttccaactt |
338 |
Q |
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||| ||||| |||||||||||||||||||| ||||| ||||||| | | ||||||| ||||| ||||||||||||| ||||||||| |||||||||||| |
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| T |
4105975 |
tcctactgatacccttttgcctaatcaatcacttgagttaggtgccaccttaacttcaagattctcagagaccaatttcacaagtggaaggttccaactt |
4106074 |
T |
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| Q |
339 |
tattttcgtgatgatg |
354 |
Q |
| |
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|||||| |||||||| |
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| T |
4106075 |
tattttaatgatgatg |
4106090 |
T |
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