View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_12 (Length: 335)
Name: NF13136_low_12
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 10 - 316
Target Start/End: Complemental strand, 41705125 - 41704818
Alignment:
| Q |
10 |
attatactaatatagtgcaatacaagttttatagatgtttgaatctcttaatcatttgattaaaatttgataccctgttaatacgaataaaatattgaaa |
109 |
Q |
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| T |
41705125 |
attatactaatatagtgcaatacaagttttatagatgattgaatctcttaatcatttaattaaaatttgataccctgttaatacgaataaaatattgaaa |
41705026 |
T |
|
| Q |
110 |
gaagtgcagaaatcttttctt-aaaacaaggttttgtctttacaagcttctttgtcttatgtttttattcttaatttcatcttgttgactcnnnnnnngt |
208 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
41705025 |
gaagtgcagaaatcttttcttaaaaacaaggttttgtctttacaagcttctttgtcttatgtttttattcttaatttcatcttgttgactctttttttgt |
41704926 |
T |
|
| Q |
209 |
aaaggtcattcctctacttctaagcaagaaattagtatcactaaaaaaggtttaaacaccaacagtggaagtggataggctttttaaaaaaggtttaaat |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704925 |
aaaggtcattcctctacttctaagcaagaaattagtatcgctaaaaaaggtttaaacaccaacagtggaagtggataggctttttaaaaaaggtttaaat |
41704826 |
T |
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| Q |
309 |
accgatgg |
316 |
Q |
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|||||||| |
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| T |
41704825 |
accgatgg |
41704818 |
T |
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