View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13136_low_18 (Length: 221)

Name: NF13136_low_18
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13136_low_18
NF13136_low_18
[»] chr7 (5 HSPs)
chr7 (54-101)||(20085273-20085320)
chr7 (19-64)||(20079082-20079127)
chr7 (52-101)||(20079131-20079180)
chr7 (10-64)||(20085213-20085267)
chr7 (162-202)||(20085381-20085421)


Alignment Details
Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 54 - 101
Target Start/End: Original strand, 20085273 - 20085320
Alignment:
Q  54 ttgtttgttattgactctattttcagctacaatggagccaattacaac 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20085273 ttgtttgttattgactctattttcagctacaatggagccaattacaac 20085320  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 20079082 - 20079127
Alignment:
Q  19 tggcaaaattatgtctactaaaattataagaacagttgtttgttat 64  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  20079082 tggcaaaattatgtctactaaaattataagaacagttgtttgttat 20079127  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 52 - 101
Target Start/End: Original strand, 20079131 - 20079180
Alignment:
Q  52 agttgtttgttattgactctattttcagctacaatggagccaattacaac 101  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20079131 agttgtttgttattgactctattttcagctacaatggtgccaattacaac 20079180  T

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Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 10 - 64
Target Start/End: Original strand, 20085213 - 20085267
Alignment:
Q  10 cgaagaatatggcaaaattatgtctactaaaattataagaacagttgtttgttat 64  Q
    |||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||    
T  20085213 cgaacaatgtggcaaaattatgtctactaaaattataagaacggttgtttgttat 20085267  T

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Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 20085381 - 20085421
Alignment:
Q  162 gtcctcggtgttggttcaaccgacacttaactaagcgaagt 202  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20085381 gtcctcggtgttggttcaaccgacacttaactaagcgaagt 20085421  T

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