View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13136_low_2 (Length: 690)
Name: NF13136_low_2
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 346; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 306 - 675
Target Start/End: Complemental strand, 29672815 - 29672446
Alignment:
| Q |
306 |
gccgccaccgcccttgacttcgtcgaaacaaccttaatcaaacaagaacagaaacacccactaccaaaaacctccgacccacgtgtccaaattgccggta |
405 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||| |
|
|
| T |
29672815 |
gccgccaccgccctcgacttcgtcgaaacaaccttaatcaaacaagaacaaaaacacccactacccaaaacctccgacccacgtgttcaaattgccggta |
29672716 |
T |
|
| Q |
406 |
acttcgccccagtaccggaacacccggtaacccaatctcttccaattaccggcaaaatcccaaccaacattgacggtgtttacctccgtaacggcgccaa |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29672715 |
acttcgccccagtaccggaacacccggtaacccaatctcttccaattaccggcaaaatcccaaccaacattgacggtgtttacctccgtaacggcgccaa |
29672616 |
T |
|
| Q |
506 |
tccactttacgagccagtagccggtcaccacttcttcgacggagacggtatggtccacgccgttaaattcacaaacggctccgtcagttactcttgccgc |
605 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29672615 |
tccactttacgagccagtagccggtcaccacttcttcgacggagacggtatggtccacgccgttaaattcacaaacggctccgtaagttactcttgccgc |
29672516 |
T |
|
| Q |
606 |
ttcaccgaaacccaccgtttggcccaagaaaaagccctgggtcggcccgtttttccaaaagccataggtg |
675 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
29672515 |
ttcaccgaaacccaccgtttggcccaagaaaaagccctgggccggcccgtttttccaaaagccataggtg |
29672446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 159; E-Value: 3e-84
Query Start/End: Original strand, 12 - 170
Target Start/End: Complemental strand, 29673109 - 29672951
Alignment:
| Q |
12 |
tcatcaaacacatggattaacaccaaacttggttcatcatcttcatactcttctcctttcaaagattcaagatcaaattcaatcactttaaagaagaaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29673109 |
tcatcaaacacatggattaacaccaaacttggttcatcatcttcatactcttctcctttcaaagattcaagatcaaattcaatcactttaaagaagaaaa |
29673010 |
T |
|
| Q |
112 |
gatctatctcccaaaacaacaaaatctcatgctcacttcaaacaacactaccttttcct |
170 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29673009 |
gatctatctcccaaaacaacaaaatctcatgctcacttcaaacaacactaccttttcct |
29672951 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University