View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_3 (Length: 621)
Name: NF13136_low_3
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 316 - 602
Target Start/End: Complemental strand, 33889745 - 33889459
Alignment:
| Q |
316 |
tcaaaatcttcaagttacaaaaatattagctgctcttctagtgcatgtaaagatacacctgaagtagatacctcttgtaaccacgacgaagatgcttgtg |
415 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33889745 |
tcaaaatcttcaagttacaaaaatattagctgctcttctagtgcatgtaaagatacacctgaagtagatacctcttgtaaccacgacgaagatgcttgtg |
33889646 |
T |
|
| Q |
416 |
aatattcggttacatatggtggtgatgcaaagtcacacggagatcttagtacggagactctaacattagattccacctccggctctagtgtattgtttcc |
515 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33889645 |
aatattcggttacatatggtggtgatgcaaagtcacacggagatcttagtacggagactctaacattagattccacctccggctctagtgtattgtttcc |
33889546 |
T |
|
| Q |
516 |
taaaactgtgataggatgtggacacgtcaacgtgttgtcggataacgatcaaagctctggtatagttggcatgggaagtggacaaat |
602 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33889545 |
taaaactgtgataggatgtggacacgtcaacatgttgtcggataacgatcaaagctctagtatagttggcatgggaagtggacaaat |
33889459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 320
Target Start/End: Complemental strand, 33890074 - 33889766
Alignment:
| Q |
13 |
tgaacaacggtttcaatgttgaactcattcatcgtgactcctcaaaatcacccatgtaccatctgatagaaactaaattca-aagagtttataatgttgt |
111 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
33890074 |
tgaacaatggtttcagtgttgaactcattcatcgtgactcctcaaaatcacccatctaccatcccatagaaactaaattccgaagaacttataatgttgt |
33889975 |
T |
|
| Q |
112 |
gcttcattcaattaatcatgtcaatcacttctcgaaacaatttttactcgatacaaatcaacctgtatcaactttaatcccagattcagatgagtatctc |
211 |
Q |
| |
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| || ||||||||||| ||| ||||||||||| |||||||| | || | |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
33889974 |
gagtcgttcaattaatcgtgttaatcacttctccaaacaattctcacacaatacaaatcaacctgtatcaactttaatcccagattcaagtgagtatctc |
33889875 |
T |
|
| Q |
212 |
attagttgcttagttggtactccaccttttaaggcttatggttttatggatacagatagtaacttaatatggctccaatgtcggccttgtaatacatgtt |
311 |
Q |
| |
|
||||||| ||| |||||||| ||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||| |||| |
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| T |
33889874 |
attagttacttggttggtacgccaccctttaaggcgtatggttttatggatacaggtagtaacttaatatggctccaatgtcagccttgtcatacctgtt |
33889775 |
T |
|
| Q |
312 |
tcaatcaaa |
320 |
Q |
| |
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||||||||| |
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| T |
33889774 |
tcaatcaaa |
33889766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 81; E-Value: 8e-38
Query Start/End: Original strand, 416 - 560
Target Start/End: Original strand, 33893397 - 33893541
Alignment:
| Q |
416 |
aatattcggttacatatggtggtgatgcaaagtcacacggagatcttagtacggagactctaacattagattccacctccggctctagtgtattgtttcc |
515 |
Q |
| |
|
||||||| ||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||| | ||||| |
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|
| T |
33893397 |
aatattctattacatacggtggtgatgcaaagtcacaaggagatcttagtatggagactctaacattagattccacctccaactctagtgtctcatttcc |
33893496 |
T |
|
| Q |
516 |
taaaactgtgataggatgtggacacgtcaacgtgttgtcggataa |
560 |
Q |
| |
|
||| || |||||||||||||| |||||||| ||||| || ||||| |
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|
| T |
33893497 |
taataccgtgataggatgtgggcacgtcaatgtgttatcagataa |
33893541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 316 - 378
Target Start/End: Original strand, 33893297 - 33893360
Alignment:
| Q |
316 |
tcaaaatcttcaag-ttacaaaaatattagctgctcttctagtgcatgtaaagatacacctgaa |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||| |||||||||||||||||| ||||| |
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| T |
33893297 |
tcaaaatcttcaaacttacaaaaatattagttgctctttcagtgcatgtaaagatacatctgaa |
33893360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 4e-58; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 39 - 320
Target Start/End: Complemental strand, 45397013 - 45396731
Alignment:
| Q |
39 |
attcatcgtgactcctcaaaatcacccatgtaccatctgatagaaactaaatt-caaagagtttataatgttgtgcttcattcaattaatcatgtcaatc |
137 |
Q |
| |
|
||||| ||||||| ||||||||||||| | ||||||| | || ||||||||| ||||||| |||||||||||||| || |||||| |||| ||||||| |
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|
| T |
45397013 |
attcaccgtgacttctcaaaatcacccctataccatcccacagtaactaaatttcaaagagcttataatgttgtgcatcgttcaatcaatcgtgtcaatt |
45396914 |
T |
|
| Q |
138 |
acttctcgaaacaatttttactcgatacaaatcaacctgtatcaactttaatcccagattcagatgagtatctcattagttgcttagttggtactccacc |
237 |
Q |
| |
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||||| | ||| |||| | ||| ||| ||||||||||||||||||||||| |||||| | || ||||||||||||||||| || ||||||||| ||||| |
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| T |
45396913 |
acttcaccaaagaattctctctcaataaaaatcaacctgtatcaactttaaccccagaattaggtgagtatctcattagttactcagttggtaccccacc |
45396814 |
T |
|
| Q |
238 |
ttttaaggcttatggttttatggatacagatagtaacttaatatggctccaatgtcggccttgtaatacatgtttcaatcaaa |
320 |
Q |
| |
|
||||| | ||| |||||||||||||||| ||||||| || | ||||| ||||| | |||||||||||||||||||||||||| |
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|
| T |
45396813 |
ctttaaagtttaaggttttatggatacaggtagtaacatagtttggcttcaatgccagccttgtaatacatgtttcaatcaaa |
45396731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 29 - 320
Target Start/End: Original strand, 28402462 - 28402754
Alignment:
| Q |
29 |
tgttgaactcattcatcgtgactcctcaaaatcacccatgtaccatctgatagaaactaaattc-aaagagtttataatgttgtgcttcattcaattaat |
127 |
Q |
| |
|
||||||| | ||||| ||||||||||||||||||||| | ||||||| || ||| ||||| |||||| |||||||||||||| || |||||| ||| |
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|
| T |
28402462 |
tgttgaaatgattcaccgtgactcctcaaaatcacccctataccatcccgcagtaacaaaatttgaaagagcttataatgttgtgcatcgttcaatcaat |
28402561 |
T |
|
| Q |
128 |
catgtcaatcacttctcgaaacaatttttactcgatacaaatcaacctgtatcaactttaatcccagattcagatgagtatctcattagttgcttagttg |
227 |
Q |
| |
|
| ||||||| ||||| | ||| |||| | ||| ||| ||||||||||||||||||||||| |||||| | || ||||||||||||||||| || ||||| |
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|
| T |
28402562 |
cgtgtcaattacttcaccaaagaattctctctcaataaaaatcaacctgtatcaactttaaccccagaattaggtgagtatctcattagttactcagttg |
28402661 |
T |
|
| Q |
228 |
gtactccaccttttaaggcttatggttttatggatacagatagtaacttaatatggctccaatgtcggccttgtaatacatgtttcaatcaaa |
320 |
Q |
| |
|
|||| ||||| ||||| | |||||||||||||||||||| ||||||| || | ||||| ||||| | ||||||| |||||||||||||||||| |
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|
| T |
28402662 |
gtaccccaccctttaaagtttatggttttatggatacaggtagtaacatagtttggcttcaatgccagccttgtcatacatgtttcaatcaaa |
28402754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 316 - 598
Target Start/End: Original strand, 28402775 - 28403057
Alignment:
| Q |
316 |
tcaaaatcttcaagttacaaaaatattagctgctcttctagtgcatgtaaagatacacctgaagtagatacctcttgtaaccacgacgaagatgcttgtg |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| |||| | ||| ||||||| | | | | ||||| ||||| |
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|
| T |
28402775 |
tcaaaatcttcaagttacaaaaatattccctgcacttctagtacatgtaaagatacaaatgaaacacatatctcttgttccaatggaggagatgtttgtg |
28402874 |
T |
|
| Q |
416 |
aatattcggttacatatggtggtgatgcaaagtcacacggagatcttagtacggagactctaacattagattccacctccggctctagtgtattgtttcc |
515 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||| || | | ||||||||||||||||||| || |||||||| || ||||| |
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|
| T |
28402875 |
aatattctattacatatggtggtgatgcaaagtcacaaggggatcttagtaatgatagtttaacattagattccacctcaggatctagtgtcttatttcc |
28402974 |
T |
|
| Q |
516 |
taaaactgtgataggatgtggacacgtcaacgtgttgtcggataacgatcaaagctctggtatagttggcatgggaagtggac |
598 |
Q |
| |
|
||| | ||||||||||||||||||| |||| || | |||||| ||||||||| ||| ||||||| |||||||| |||| |
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|
| T |
28402975 |
taacattgtgataggatgtggacacatcaatgtactacaagataacagtcaaagctcgggtgtagttggaatgggaaggggac |
28403057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 316 - 598
Target Start/End: Complemental strand, 45396710 - 45396428
Alignment:
| Q |
316 |
tcaaaatcttcaagttacaaaaatattagctgctcttctagtgcatgtaaagatacacctgaagtagatacctcttgtaaccacgacgaagatgcttgtg |
415 |
Q |
| |
|
||||||||||||||||||||||||||| |||| |||||||| |||||||||||||| ||| | ||| ||||||| | | | | ||||| ||||| |
|
|
| T |
45396710 |
tcaaaatcttcaagttacaaaaatattccctgcacttctagtacatgtaaagatacaaatgatacacatatctcttgttccaatggaggagatgtttgtg |
45396611 |
T |
|
| Q |
416 |
aatattcggttacatatggtggtgatgcaaagtcacacggagatcttagtacggagactctaacattagattccacctccggctctagtgtattgtttcc |
515 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| || |||||||||| || | | ||||||||||||||||||| || |||||||| || ||||| |
|
|
| T |
45396610 |
aatattctattacatatggtggtgatgcaaagtcacaaggggatcttagtaatgatagtttaacattagattccacctcaggatctagtgtcttatttcc |
45396511 |
T |
|
| Q |
516 |
taaaactgtgataggatgtggacacgtcaacgtgttgtcggataacgatcaaagctctggtatagttggcatgggaagtggac |
598 |
Q |
| |
|
||| | ||||||||||||||||||| |||| ||| | |||||| ||||||||| ||| ||||||| |||||||| |||| |
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|
| T |
45396510 |
taacattgtgataggatgtggacacatcaatgtgctacaagataacagtcaaagctcgggtgtagttggaatgggaaggggac |
45396428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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