View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13136_low_4 (Length: 569)

Name: NF13136_low_4
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13136_low_4
NF13136_low_4
[»] chr2 (15 HSPs)
chr2 (45-554)||(8368083-8368592)
chr2 (45-554)||(8400818-8401327)
chr2 (45-554)||(8422395-8422904)
chr2 (63-295)||(8375924-8376156)
chr2 (76-319)||(8411863-8412106)
chr2 (76-319)||(8433961-8434204)
chr2 (84-156)||(8416952-8417024)
chr2 (76-132)||(8431014-8431070)
chr2 (76-156)||(8405743-8405823)
chr2 (66-145)||(8403777-8403856)
chr2 (76-156)||(8395749-8395829)
chr2 (189-319)||(8431115-8431245)
chr2 (210-319)||(8417215-8417324)
chr2 (209-295)||(8439093-8439179)
chr2 (276-312)||(8403987-8404023)
[»] chr4 (5 HSPs)
chr4 (66-125)||(55336092-55336151)
chr4 (65-126)||(55330659-55330720)
chr4 (441-503)||(55331029-55331091)
chr4 (443-503)||(55336466-55336526)
chr4 (210-319)||(55336242-55336351)


Alignment Details
Target: chr2 (Bit Score: 477; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 45 - 554
Target Start/End: Original strand, 8368083 - 8368592
Alignment:
Q  45 gaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagcca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368083 gaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagcca 8368182  T
Q  145 atgctccagccataacaggaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagc 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368183 atgctccagccataacaggtactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagc 8368282  T
Q  245 caatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttct 344  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368283 caatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttct 8368382  T
Q  345 aatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttctagatgannnnnnngtaggcctccaatttgcag 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8368383 aatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttctagatgatttttttgtaggcctccaatttgcag 8368482  T
Q  445 gttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagctctatcaagagctagaacttcttgaatagtatcctttatata 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8368483 gttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagctctatcaagagctagaacttcttgaatagtatcctttatata 8368582  T
Q  545 ttcctctgtg 554  Q
    ||||||||||    
T  8368583 ttcctctgtg 8368592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 45 - 554
Target Start/End: Complemental strand, 8401327 - 8400818
Alignment:
Q  45 gaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagcca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401327 gaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagcca 8401228  T
Q  145 atgctccagccataacaggaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagc 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401227 atgctccagccataacaggtactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagc 8401128  T
Q  245 caatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttct 344  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8401127 caatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttct 8401028  T
Q  345 aatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttctagatgannnnnnngtaggcctccaatttgcag 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8401027 aatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttctagatgatttttttgtaggcctccaatttgcag 8400928  T
Q  445 gttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagctctatcaagagctagaacttcttgaatagtatcctttatata 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8400927 gttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagctctatcaagagctagaacttcttgaatagtatcctttatata 8400828  T
Q  545 ttcctctgtg 554  Q
    ||||||||||    
T  8400827 ttcctctgtg 8400818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 477; E-Value: 0
Query Start/End: Original strand, 45 - 554
Target Start/End: Complemental strand, 8422904 - 8422395
Alignment:
Q  45 gaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagcca 144  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422904 gaactttccatcatttgaaagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagcca 8422805  T
Q  145 atgctccagccataacaggaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagc 244  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422804 atgctccagccataacaggtactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagc 8422705  T
Q  245 caatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttct 344  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422704 caatgtcttatttatcttcaacaccaagtttcctaatctctcataatcttccatatcttttctcttcataacttctaatacatcttttacttcactttct 8422605  T
Q  345 aatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttctagatgannnnnnngtaggcctccaatttgcag 444  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||    
T  8422604 aatccttcattccatccatttttctttgtttcattattttctgaatgaaaactattgttgcttcttctagatgatttttttgtaggcctccaatttgcag 8422505  T
Q  445 gttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagctctatcaagagctagaacttcttgaatagtatcctttatata 544  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8422504 gttcatatttttgagggaatttttcaatcataactcctaacaaaggtagtggataagctctatcaagagctagaacttcttgaatagtatcctttatata 8422405  T
Q  545 ttcctctgtg 554  Q
    ||||||||||    
T  8422404 ttcctctgtg 8422395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 63 - 295
Target Start/End: Complemental strand, 8376156 - 8375924
Alignment:
Q  63 aagaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagccataacag 162  Q
    ||||| |||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||   ||| ||||||||  ||||||| || ||    
T  8376156 aagaaaccaccagaagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaattacagaagccaatgaaccagccaaaagag 8376057  T
Q  163 gaactatagatgccaatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatctt 262  Q
    |||| | ||  ||||| |||||   ||| |||||||| || || | |||||||||||| ||||| ||||| |||||||| |||||  |||| |||| |||    
T  8376056 gaacaaaagcagccaaagaaccactacctacaaatgtcgatccaatagctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttacctt 8375957  T
Q  263 caataccaagtttcctaatctctcataatcttc 295  Q
    |||| | | |||||| | ||| |||||||||||    
T  8375956 caatgctatgtttccaagtctgtcataatcttc 8375924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 76 - 319
Target Start/End: Original strand, 8411863 - 8412106
Alignment:
Q  76 aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagccataacaggaactatagatgc 175  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||  |||| ||  | |||||| |  |  ||    
T  8411863 aagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagc 8411962  T
Q  176 caatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagttt 275  Q
    ||| ||||  |  || |||||||| || || |  ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | ||||    
T  8411963 caaagaactattgcctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgttt 8412062  T
Q  276 cctaatctctcataatcttccatatcttttctcttcataacttc 319  Q
    || | ||| |||||||||||   |||||||||||| || |||||    
T  8412063 ccaagtctgtcataatcttcagaatcttttctcttgatcacttc 8412106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 76 - 319
Target Start/End: Original strand, 8433961 - 8434204
Alignment:
Q  76 aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagccataacaggaactatagatgc 175  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| ||||||||||| ||||||||  |||| ||  | |||||| |  |  ||    
T  8433961 aagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaacagcagaagccaatgaaccagtcaatagaggaacaaatgcagc 8434060  T
Q  176 caatgaaccttgaccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagttt 275  Q
    ||| ||||  |  || |||||||| || || |  ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | ||||    
T  8434061 caaagaactattgcctacaaatgtagatccaattgctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgttt 8434160  T
Q  276 cctaatctctcataatcttccatatcttttctcttcataacttc 319  Q
    || | ||| |||||||||||   |||||||||||| || |||||    
T  8434161 ccaagtctgtcataatcttcagaatcttttctcttgatcacttc 8434204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 8416952 - 8417024
Alignment:
Q  84 tacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca 156  Q
    ||||||||| ||||||| ||||||||||||||||||||||||| |||||| |||| ||||||||  |||||||    
T  8416952 tacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaactgcagaagccaatgaaccagcca 8417024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 76 - 132
Target Start/End: Original strand, 8431014 - 8431070
Alignment:
Q  76 aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaa 132  Q
    ||||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  8431014 aagctctatacatttcaaaaaccatgccaacttgtccaccatgctcaaaagtattaa 8431070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 76 - 156
Target Start/End: Original strand, 8405743 - 8405823
Alignment:
Q  76 aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca 156  Q
    ||||||||||||||||| ||||||| ||||||||||||||||| ||||||| ||| |  |||| ||||||||  |||||||    
T  8405743 aagctctatacatttcaaaaaccatgccaacttgtccaccatgttcaaaagtattgattgcagaagccaatgaaccagcca 8405823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 145
Target Start/End: Original strand, 8403777 - 8403856
Alignment:
Q  66 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaa 145  Q
    |||||||||||   ||||||||| ||| | ||||||||||||||||| ||||||||||||| ||||||| |||| |||||    
T  8403777 aatccaccacagtttctatacatctcaaacaccataccaacttgtcctccatgctcaaaagtattaacaacagttgccaa 8403856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 156
Target Start/End: Complemental strand, 8395829 - 8395749
Alignment:
Q  76 aagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaagaattaacagcagtagccaatgctccagcca 156  Q
    ||||||||||||||||| ||||||| |||| |||||||||||| ||||||| ||| |  |||| ||||||||  |||||||    
T  8395829 aagctctatacatttcaaaaaccatgccaatttgtccaccatgttcaaaagtatttattgcagaagccaatgaaccagcca 8395749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 8431115 - 8431245
Alignment:
Q  189 ccaacaaatgtggaccccacagctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcat 288  Q
    |||| |||||| || || | |||||||||||| | ||||||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| ||||    
T  8431115 ccaataaatgtagatcctatagctgcaattcctgagagtaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctatcat 8431214  T
Q  289 aatcttccatatcttttctcttcataacttc 319  Q
    ||||||| |  ||||||||||| || |||||    
T  8431215 aatcttcaacgtcttttctctttatcacttc 8431245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 8417215 - 8417324
Alignment:
Q  210 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 309  Q
    ||||||||||| ||||||||||| |||||||| |||||  |||| |||| ||||||  | | |||||| | ||| |||||||||||   |||||||||||    
T  8417215 gctgcaattcctgtgagtaatggccctgcaattgccaaactcttgtttaccttcaacgctatgtttccaagtctgtcataatcttcagaatcttttctct 8417314  T
Q  310 tcataacttc 319  Q
    | || |||||    
T  8417315 tgatcacttc 8417324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 295
Target Start/End: Original strand, 8439093 - 8439179
Alignment:
Q  209 agctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttc 295  Q
    |||||||||||| ||||| ||||| |||||||| |||||  |||| |||| ||||||| | | |||||| | ||| |||||||||||    
T  8439093 agctgcaattcctgtgagcaatggccctgcaattgccaaactcttgtttaccttcaatgctatgtttccaagtctgtcataatcttc 8439179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 276 - 312
Target Start/End: Original strand, 8403987 - 8404023
Alignment:
Q  276 cctaatctctcataatcttccatatcttttctcttca 312  Q
    ||||||||||||||||| || ||||||||||||||||    
T  8403987 cctaatctctcataatcctcaatatcttttctcttca 8404023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 66 - 125
Target Start/End: Original strand, 55336092 - 55336151
Alignment:
Q  66 aatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaa 125  Q
    |||||||||||   ||||||||||||| | ||||||||||||||||||||||||||||||    
T  55336092 aatccaccacagtttctatacatttcaaacaccataccaacttgtccaccatgctcaaaa 55336151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 65 - 126
Target Start/End: Original strand, 55330659 - 55330720
Alignment:
Q  65 gaatccaccacaagctctatacatttcagaaaccataccaacttgtccaccatgctcaaaag 126  Q
    |||||||||||||  ||||||||||||| | |||||||||| |||||||||||| |||||||    
T  55330659 gaatccaccacaatttctatacatttcaaataccataccaatttgtccaccatgttcaaaag 55330720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 441 - 503
Target Start/End: Original strand, 55331029 - 55331091
Alignment:
Q  441 gcaggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagct 503  Q
    ||||||| |||||||  ||| |||||||||| |||||| ||||| ||||||||||||||||||    
T  55331029 gcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagct 55331091  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 443 - 503
Target Start/End: Original strand, 55336466 - 55336526
Alignment:
Q  443 aggttcatatttttgagggaatttttcaatcataactcctaacaaaggaagtggataagct 503  Q
    |||||||||||||  ||| || ||||||| |||| ||||||||| ||||||||||||||||    
T  55336466 aggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagct 55336526  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 319
Target Start/End: Original strand, 55336242 - 55336351
Alignment:
Q  210 gctgcaattccagtgagtaatggtcctgcaatagccaatgtcttatttatcttcaataccaagtttcctaatctctcataatcttccatatcttttctct 309  Q
    ||||||||||||||||||||||| ||||| || ||||   |||| || ||||||||| | |  ||||| | ||||||||| ||||| || ||||| ||||    
T  55336242 gctgcaattccagtgagtaatggacctgctattgccatactcttgttaatcttcaatgctatatttccaagtctctcatagtcttcaatgtctttactct 55336341  T
Q  310 tcataacttc 319  Q
    | | ||||||    
T  55336342 ttacaacttc 55336351  T

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