View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_6 (Length: 455)
Name: NF13136_low_6
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 412; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 412; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Complemental strand, 6778605 - 6778186
Alignment:
| Q |
18 |
cctgtgcgcccttaacttcaccccttttacaaaagccatcaatcaacatattataagtataaaaattaggctcaacattggatttaagcatggtagtata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778605 |
cctgtgcgcccttaacttcaccccttttacaaaagccatcaatcaacatattataagtataaaaattaggctcaacattggatttaagcatggtagtata |
6778506 |
T |
|
| Q |
118 |
caatgcaagagcaagctcaagtaacttttcattcaacacatctctcaaaattgtgttatacatatgagcatcaggttcaataccaaattcacgcattcta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778505 |
caatgcaagagcaagctcaagtaacttttcattcaacacatctctcaaaattgtgttatacatatgagcatcaggttcaataccaaattcacgcattcta |
6778406 |
T |
|
| Q |
218 |
ctaaatgattctatagctttttcggtataacccatatgagaataagatctaaccaaagctctaacggaatctgaagttactaaaacaccatttttcttga |
317 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778405 |
ctgaatgattctatagctttttcggtataacccatatgagaataagatctaaccaaagctctaacggaatctgaagttactaaaacaccatttttcttga |
6778306 |
T |
|
| Q |
318 |
gaagctcaagagcttcccagtaaatgcaataccaatttttatggaaaatgatacggttaaccaagcaataaggttcgtagctaagattctcaaatttgag |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6778305 |
gaagctcaagagcttcccagtaaatggaataccaatttttatggaaaatgatacggttaaccaagcaataaggttcgtagctaagattctcaaatttgag |
6778206 |
T |
|
| Q |
418 |
agctacccagatgcagaaac |
437 |
Q |
| |
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| T |
6778205 |
agctacccagatgcagaaac |
6778186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 400; E-Value: 0
Query Start/End: Original strand, 18 - 437
Target Start/End: Original strand, 17488473 - 17488892
Alignment:
| Q |
18 |
cctgtgcgcccttaacttcaccccttttacaaaagccatcaatcaacatattataagtataaaaattaggctcaacattggatttaagcatggtagtata |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488473 |
cctgtgcacccttaacttcaccccttttacaaaagccatcaatcaacatattataagtataaaaattaggctcaacattggatttaagcatggtagtata |
17488572 |
T |
|
| Q |
118 |
caatgcaagagcaagctcaagtaacttttcattcaacacatctctcaaaattgtgttatacatatgagcatcaggttcaataccaaattcacgcattcta |
217 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488573 |
caatgcaagagcaagctcaagtaacttttcattcaacacatctctcaaaattgtgttatacatatgagcatcaggttcaataccaaattcacgcattcta |
17488672 |
T |
|
| Q |
218 |
ctaaatgattctatagctttttcggtataacccatatgagaataagatctaaccaaagctctaacggaatctgaagttactaaaacaccatttttcttga |
317 |
Q |
| |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488673 |
ctgaatgattctatagctttttcggtataacccatatgagaataagatctaaccaaagctctaacggaatctgaagttactaaaacaccatttttcttga |
17488772 |
T |
|
| Q |
318 |
gaagctcaagagcttcccagtaaatgcaataccaatttttatggaaaatgatacggttaaccaagcaataaggttcgtagctaagattctcaaatttgag |
417 |
Q |
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|||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17488773 |
gaagctcaagagcttcccagtaaatggaataccaatttctatggaaaaggatacggttaaccaagcaataaggttcgtagctaagattctcaaatttgag |
17488872 |
T |
|
| Q |
418 |
agctacccagatgcagaaac |
437 |
Q |
| |
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|||||||||||||||||||| |
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| T |
17488873 |
agctacccagatgcagaaac |
17488892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 9 - 437
Target Start/End: Complemental strand, 43096063 - 43095635
Alignment:
| Q |
9 |
cgagcagaacctgtgcgcccttaacttcaccccttttacaaaagccatcaatcaacatattataagtataaaaattaggctcaacattggatttaagcat |
108 |
Q |
| |
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||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43096063 |
cgagcagctcctgtgcacccttaacttcaccccttttacaaattccatcaatcaacatattataagtataaaaattaggctcaacattggatttaagcat |
43095964 |
T |
|
| Q |
109 |
ggtagtatacaatgcaagagcaagctcaagtaacttttcattcaacacatctctcaaaattgtgttatacatatgagcatcaggttcaataccaaattca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
43095963 |
ggtagtatacaatgcaagagcaagctcaagtaacttttcattcaacatctctctcaaaattgtgttatacatatgagcatcaggttcaacaccaaattcg |
43095864 |
T |
|
| Q |
209 |
cgcattctactaaatgattctatagctttttcggtataacccatatgagaataagatctaaccaaagctctaacggaatctgaagttactaaaacaccat |
308 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
43095863 |
cgcattctaacgaatgattctatagcttttttggtataacccatataggaataagatctaaccaaagctctaacggaatctgaagttactaaaacacctt |
43095764 |
T |
|
| Q |
309 |
ttttcttgagaagctcaagagcttcccagtaaatgcaataccaatttttatggaaaatgatacggttaaccaagcaataaggttcgtagctaagattctc |
408 |
Q |
| |
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|||||||||||||||||||||||||| |||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
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| T |
43095763 |
ttttcttgagaagctcaagagcttcctagtaaatggaatactagtttttatggaaaaggatacggttaaccaagcaataaggttcaaagctaagattctc |
43095664 |
T |
|
| Q |
409 |
aaatttgagagctacccagatgcagaaac |
437 |
Q |
| |
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|||||||||||||||||| |||||||||| |
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|
| T |
43095663 |
aaatttgagagctacccaaatgcagaaac |
43095635 |
T |
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