View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_8 (Length: 428)
Name: NF13136_low_8
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 69 - 413
Target Start/End: Complemental strand, 1458887 - 1458543
Alignment:
| Q |
69 |
cctaaaattttatgtacccaccgccaattaaaaaacaaacaaacaactataaaccctaacaagagttcttaccactaccaattaaaaa-caaacaaacaa |
167 |
Q |
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| T |
1458887 |
cctaaaatcttatgtaaccaccgccaattaaaaaacaaacaaacaaatataaacc-----aagagttcttaacgctaccaattaaaaaacaaacaaacaa |
1458793 |
T |
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| Q |
168 |
atataaaccctaacaagatttcttagtatgactttcatataatttggtcatcggtgac--aaaagaaagaaaacggtatgtgacggcatatttaaagcat |
265 |
Q |
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| T |
1458792 |
atataaaccctaacaagagtttttagtatgactttcatatagtttgatcatcggtgacgacaaagaaagaaaacggcatgtgacggcatatttaaagcat |
1458693 |
T |
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| Q |
266 |
cattcatgatttatcaac-nnnnnnnntca-tcatgattgtaaatttttcatatatatagatctctaagaaattaaacattaataatatttgatttgatg |
363 |
Q |
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| T |
1458692 |
cattcatgatttattaacaaaaaaaaatcattcatgattgtaaatttttcatatatactgatctctatgaaattaaacattaataatatttgatttgatg |
1458593 |
T |
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| Q |
364 |
gaaatattgacgtaataaataacatgaccaatattttttgaggcataaac |
413 |
Q |
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| T |
1458592 |
gaaatatcgacgtaataaataacatgaccaatattttttgaggcataaac |
1458543 |
T |
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