View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13136_low_9 (Length: 428)
Name: NF13136_low_9
Description: NF13136
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13136_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 12 - 410
Target Start/End: Original strand, 27323663 - 27324061
Alignment:
| Q |
12 |
tgaaatgaataaatcagcgcagaataggcaatgtttcatgtaagtaactgtatcttatgtcgatgaacatatgtatttatcacagtaaatttttaaataa |
111 |
Q |
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| T |
27323663 |
tgaaatgaataaatcagcgcagaataggcaatgtttcatgtaagtaactgtatcttatgtcgatgaacatatgtatttatcacagtaaatttttaaataa |
27323762 |
T |
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| Q |
112 |
tattccctcagttgtaatgtatacttacttttgaggtcactctaaccctgctctgcttgatttctttctttatctgaagcattggcaaacaccattaaga |
211 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27323763 |
tattccctcagttgtaatttatacttacttttgaggtcactctaaccctgctctgcttgatttctttctttatctgaagcattggcaaacaccattaaga |
27323862 |
T |
|
| Q |
212 |
gataaggcaaaagataaccaaattagcaaacaaagaaaccaaattacttctatgtaaggaaaaagaaaatcaccaactcggtgtaagtatatatcattta |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
27323863 |
gataaggcaaaagataaccaaattagcaaacaaagaaaccaaattacttctatgtaaggaaaaagaaaatcaccaactcggtgtaagtatatataattta |
27323962 |
T |
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| Q |
312 |
aatagtgaaagtaatagaaacatggaaataacctcagaagaccatctggtacttatcggcaatccggccaaattcacaactcctgttgaaccctgaata |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27323963 |
aatagtgaaagtaatagaaacatggaaataacctcagaagaccatctggtacttatcggcaatccggccaaattcacaactcctgttgaaccctgaata |
27324061 |
T |
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