View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13137_high_1 (Length: 671)

Name: NF13137_high_1
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13137_high_1
NF13137_high_1
[»] chr5 (7 HSPs)
chr5 (357-654)||(10470267-10470564)
chr5 (357-580)||(43511203-43511423)
chr5 (196-305)||(10470062-10470179)
chr5 (223-305)||(43511069-43511151)
chr5 (572-654)||(43511936-43512018)
chr5 (387-503)||(14098867-14098985)
chr5 (224-304)||(4908365-4908445)
[»] chr4 (10 HSPs)
chr4 (357-654)||(20423109-20423406)
chr4 (195-305)||(20422947-20423057)
chr4 (198-302)||(46144727-46144831)
chr4 (14-121)||(9368796-9368903)
chr4 (223-305)||(39831955-39832037)
chr4 (424-491)||(19638485-19638551)
chr4 (224-304)||(23638186-23638266)
chr4 (224-304)||(36001036-36001116)
chr4 (224-304)||(36001825-36001905)
chr4 (224-300)||(23637415-23637491)
[»] chr2 (6 HSPs)
chr2 (357-654)||(34238325-34238615)
chr2 (195-305)||(34238667-34238777)
chr2 (216-290)||(41770456-41770530)
chr2 (195-305)||(41768799-41768917)
chr2 (424-503)||(30785246-30785324)
chr2 (223-304)||(30270144-30270225)
[»] chr8 (3 HSPs)
chr8 (357-654)||(42293894-42294170)
chr8 (223-305)||(42294221-42294303)
chr8 (223-303)||(5780635-5780716)
[»] chr7 (3 HSPs)
chr7 (357-558)||(45432639-45432840)
chr7 (195-305)||(45432892-45433010)
chr7 (580-625)||(45432593-45432638)
[»] chr1 (3 HSPs)
chr1 (14-171)||(51163445-51163602)
chr1 (223-304)||(44769510-44769591)
chr1 (224-304)||(17172776-17172856)
[»] chr3 (1 HSPs)
chr3 (223-305)||(17804-17886)
[»] chr6 (1 HSPs)
chr6 (424-503)||(20508984-20509064)
[»] scaffold0285 (1 HSPs)
scaffold0285 (195-231)||(17550-17586)
[»] scaffold0086 (1 HSPs)
scaffold0086 (223-258)||(8416-8451)
[»] scaffold1370 (1 HSPs)
scaffold1370 (195-231)||(203-239)


Alignment Details
Target: chr5 (Bit Score: 262; Significance: 1e-146; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 357 - 654
Target Start/End: Original strand, 10470267 - 10470564
Alignment:
Q  357 gctccatgacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaatggaattttaatcaaatctacaccacaattcgaagccc 456  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10470267 gctccatcacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaacggaattttaatcaaatctacaccacaattcgaagccc 10470366  T
Q  457 attcatagtttggttttctcaactaaagacccattcttatcttcttccattctagatccggcagccgtgaatttttcaatcaagttgaaacccatttaca 556  Q
    |||||||||||||||||||||||||||||||| || ||||||||||| |||| ||||||| ||||| ||||||||||||||||||||||||||||||| |    
T  10470367 attcatagtttggttttctcaactaaagacccgtttttatcttcttctattccagatccgacagccatgaatttttcaatcaagttgaaacccatttata 10470466  T
Q  557 gttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10470467 gttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 10470564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 357 - 580
Target Start/End: Original strand, 43511203 - 43511423
Alignment:
Q  357 gctccatgacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaatggaattttaatcaaatctacaccacaattcgaagccc 456  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  43511203 gctccatcacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaacggaattttaatcaaatctacaccacaattcgaagccc 43511302  T
Q  457 attcatagtttggttttctcaactaaagacccattcttatcttcttccattctagatccggcagccgtgaatttttcaatcaagttgaaacccatttaca 556  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||| |||||    |||| |||||||||||||||||||||||||||||||||    
T  43511303 attcatagtttggttttctcaactaaagacccgtttttatcttcttccattccagatc---gagccatgaatttttcaatcaagttgaaacccatttaca 43511399  T
Q  557 gttttggttatcttagttaaagac 580  Q
    ||||||||||||||||||||||||    
T  43511400 gttttggttatcttagttaaagac 43511423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 196 - 305
Target Start/End: Original strand, 10470062 - 10470179
Alignment:
Q  196 ggcatttcaagtgagaggattttttaaatga--------gaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaa 287  Q
    ||||| |||||||||||||||||||||||||        ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  10470062 ggcatatcaagtgagaggattttttaaatgagaggatgagaggactcattaatagccattagattaaattgaacggatcagattaaaagcttcatataaa 10470161  T
Q  288 attgattgcacatgatta 305  Q
    ||||||||||||||||||    
T  10470162 attgattgcacatgatta 10470179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 223 - 305
Target Start/End: Original strand, 43511069 - 43511151
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatta 305  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  43511069 atgagaggactcattaatagccattagatcaaattgaacggatctgattaaaagcttcatataaaattgattgcacatgatta 43511151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 572 - 654
Target Start/End: Original strand, 43511936 - 43512018
Alignment:
Q  572 gttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 654  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||    
T  43511936 gttaaagacccctctttcttcgaccttgaattttgtaggatatattttctaacttaatttttataggtagttaaccaacaatt 43512018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 387 - 503
Target Start/End: Complemental strand, 14098985 - 14098867
Alignment:
Q  387 cccttgtttcttcaacttcataacaacaacaatgg---aattttaatcaaatctacaccacaattcgaagcccattcatagtttggttttctcaactaaa 483  Q
    ||||| ||||||||||| |||| ||| ||||||||     ||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| ||    
T  14098985 cccttatttcttcaactccatatcaataacaatggtttttttttaatcaaatctacaccacaagtcgaaacccattcatagttt-gctttctcaactgaa 14098887  T
Q  484 gacccattcttatcttcttc 503  Q
    |||||||| || ||||||||    
T  14098886 gacccatttttttcttcttc 14098867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 4908365 - 4908445
Alignment:
Q  224 tgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    ||||||||||| ||||||||| |||||| ||||||   || |||||||||||||| ||| ||||||| ||| |||||||||    
T  4908365 tgagaggactcgttaatagcctttagattaaattgtgtggctcagattaaaagctccatctaaaattaattacacatgatt 4908445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 357 - 654
Target Start/End: Original strand, 20423109 - 20423406
Alignment:
Q  357 gctccatgacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaatggaattttaatcaaatctacaccacaattcgaagccc 456  Q
    ||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  20423109 gctccatcacaacaacaatggactttatatcctttgtttcttcaacttcataacaacaacaacggaattttaatcaaatctacaccacaattcgaagccc 20423208  T
Q  457 attcatagtttggttttctcaactaaagacccattcttatcttcttccattctagatccggcagccgtgaatttttcaatcaagttgaaacccatttaca 556  Q
    |||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||| ||||||||    
T  20423209 attcatagtttggttttctcaactaaagacccgtttttatcttcttccattccagatccggcagccatgaatttttcaatcaagttgaaactcatttaca 20423308  T
Q  557 gttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 654  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20423309 gttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagctaaatttttataggtagttaaccaacaatt 20423406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 20422947 - 20423057
Alignment:
Q  195 gggcatttcaagtgagaggattttttaaatgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgatt 294  Q
    |||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20422947 gggcatatcaagtgagatgattttttaaatgagaggactcattaatagccattaaatcaaattgaacggatcagattaaaagcttcatataaaattgatt 20423046  T
Q  295 gcacatgatta 305  Q
    |||||||||||    
T  20423047 gcacatgatta 20423057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 198 - 302
Target Start/End: Original strand, 46144727 - 46144831
Alignment:
Q  198 catttcaagtgagaggattttttaaatgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgca 297  Q
    ||||||||||||||  | |||||||||||||||||||||||||| | |||||||||||||| | ||||||||||||||||||||||||||||| |||||     
T  46144727 catttcaagtgagaacactttttaaatgagaggactcattaataactattagatcaaattgtatggatcagattaaaagcttcatataaaattaattgct 46144826  T
Q  298 catga 302  Q
    |||||    
T  46144827 catga 46144831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 9368796 - 9368903
Alignment:
Q  14 tactcaccttaactaaataacaaatttctattgtattagacatttcaaagacaagcaaaaatatgaaaaatattactgttcaatttctctgagataggaa 113  Q
    |||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||  |||||||||| ||| ||||||||| ||  | ||||||    
T  9368796 tactcaccttaactaaataacaaatttctgctgtattagacatttcaaagacaaggaaaaacctgaaaaatataactattcaatttccctaggttaggaa 9368895  T
Q  114 gatttggg 121  Q
    ||||||||    
T  9368896 gatttggg 9368903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 39832037 - 39831955
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatta 305  Q
    ||||||||||||||||||| |||||||||||||||| | |||||||||||||| |||||||||||||| ||||||||||||||    
T  39832037 atgagaggactcattaataaccattagatcaaattgtatggatcagattaaaaacttcatataaaattaattgcacatgatta 39831955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 424 - 491
Target Start/End: Complemental strand, 19638551 - 19638485
Alignment:
Q  424 ttttaatcaaatctacaccacaattcgaagcccattcatagtttggttttctcaactaaagacccatt 491  Q
    ||||||||||||||||||||||| |||||  ||||||||||||| | |||||||||| ||||||||||    
T  19638551 ttttaatcaaatctacaccacaagtcgaaatccattcatagttt-gctttctcaactgaagacccatt 19638485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 23638266 - 23638186
Alignment:
Q  224 tgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    ||||||||||||||||||| |||||||| ||||||   || |||||||||||| | ||| ||||||| ||| |||| ||||    
T  23638266 tgagaggactcattaatagacattagattaaattgtgtggctcagattaaaagttccatctaaaattaattacacaagatt 23638186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 36001036 - 36001116
Alignment:
Q  224 tgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    ||||||||||| ||||||||||||| || ||||||   || |||||||||||||| ||| | ||||| ||| |||||||||    
T  36001036 tgagaggactctttaatagccattaaattaaattgtgtggctcagattaaaagctccattttaaattaattacacatgatt 36001116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 224 - 304
Target Start/End: Complemental strand, 36001905 - 36001825
Alignment:
Q  224 tgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    |||||||||||||||||||||||||||| |||||    || |||||||||||| | ||| ||||||| ||| |||| ||||    
T  36001905 tgagaggactcattaatagccattagattaaattatgtggctcagattaaaagttccatctaaaattaattacacaagatt 36001825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 23637415 - 23637491
Alignment:
Q  224 tgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacat 300  Q
    ||||||||||| ||||||||||||| || ||||||   || |||||||||||||| ||| | ||||| ||| |||||    
T  23637415 tgagaggactctttaatagccattaaattaaattgtgtggctcagattaaaagctccatcttaaattaattacacat 23637491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 232; Significance: 1e-128; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 357 - 654
Target Start/End: Complemental strand, 34238615 - 34238325
Alignment:
Q  357 gctccatgacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaatggaattttaatcaaatctacaccacaattcgaagccc 456  Q
    ||||||| ||||||||||||||||||||       ||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||     
T  34238615 gctccatcacaacaacaatggactttat-------gtttcttcaacttcataacaacaacaacgaaattttaatcaaatctacaccacaattcgaagccg 34238523  T
Q  457 attcatagtttggttttctcaactaaagacccattcttatcttcttccattctagatccggcagccgtgaatttttcaatcaagttgaaacccatttaca 556  Q
    |||||||||||||||||||||||| ||||||| || |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  34238522 attcatagtttggttttctcaactgaagacccgtttttatcttcttccattccagatccggcagccatgaatttttcaatcaagttgaaacccatttaca 34238423  T
Q  557 gttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 654  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34238422 attttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 34238325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 34238777 - 34238667
Alignment:
Q  195 gggcatttcaagtgagaggattttttaaatgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgatt 294  Q
    |||||| |||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||     
T  34238777 gggcatatcaagtgaaaggatttttcaaatgagaggactcattaatagccattagatcaaattgaacggatcaaattaaaagcttcatataaaattgata 34238678  T
Q  295 gcacatgatta 305  Q
    |||||||||||    
T  34238677 gcacatgatta 34238667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 216 - 290
Target Start/End: Complemental strand, 41770530 - 41770456
Alignment:
Q  216 tttttaaatgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaatt 290  Q
    |||||||||||||||||||||||||| |||| ||||||||||| | |||||||||||||||||||||||||||||    
T  41770530 tttttaaatgagaggactcattaataaccatcagatcaaattgtatggatcagattaaaagcttcatataaaatt 41770456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 195 - 305
Target Start/End: Original strand, 41768799 - 41768917
Alignment:
Q  195 gggcatttcaagtgagaggattttttaaatgagagga--------ctcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataa 286  Q
    |||||||||||||||||| | ||||||||||||||||        ||| |||||| |||||||||||||||| | ||||| ||||||||||||| |||||    
T  41768799 gggcatttcaagtgagagcactttttaaatgagaggatgagagaactcgttaataaccattagatcaaattgtatggatcggattaaaagcttcgtataa 41768898  T
Q  287 aattgattgcacatgatta 305  Q
    |||| ||||||||| ||||    
T  41768899 aattaattgcacattatta 41768917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 424 - 503
Target Start/End: Complemental strand, 30785324 - 30785246
Alignment:
Q  424 ttttaatcaaatctacaccacaattcgaagcccattcatagtttggttttctcaactaaagacccattcttatcttcttc 503  Q
    ||||||||||||||||||||||| ||||| |||||||||||||| | |||||||||| |||||||||| || ||||||||    
T  30785324 ttttaatcaaatctacaccacaagtcgaaacccattcatagttt-gctttctcaactgaagacccatttttttcttcttc 30785246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 30270225 - 30270144
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    ||||||||||||||||||||||||||||||||||||   || ||| |||||||| | |||||  |||| ||| |||||||||    
T  30270225 atgagaggactcattaatagccattagatcaaattgtgtggctcaaattaaaagttccatatttaattaattacacatgatt 30270144  T

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Target: chr8 (Bit Score: 182; Significance: 5e-98; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 182; E-Value: 5e-98
Query Start/End: Original strand, 357 - 654
Target Start/End: Complemental strand, 42294170 - 42293894
Alignment:
Q  357 gctccatgacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaatggaattttaatcaaatctacaccacaattcgaagccc 456  Q
    ||||||| ||||||||||||||||| |||||| |||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||    
T  42294170 gctccatcacaacaacaatggacttcatatccgttgtttcttcaacttcataataacagcaatggaattttaataaaatctacaccacaattcgaagccc 42294071  T
Q  457 attcatagtttggttttctcaactaaagacccattcttatcttcttccattctagatccggcagccgtgaatttttcaatcaagttgaaacccatttaca 556  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||| || |||||||||||||||||||||||||||||||||    
T  42294070 attcatagtttggttttctcaactaaagacccattcttatcttcttccattccagattcggcaaccatgaatttttcaatcaagttgaaacccatttaca 42293971  T
Q  557 gttttggttatcttagttaaagacccctctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 654  Q
     |                     ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42293970 at---------------------cccgtctttcttcgaccttgaattttgtaggatagattttctagcttaatttttataggtagttaaccaacaatt 42293894  T

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Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 42294303 - 42294221
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatta 305  Q
    ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||    
T  42294303 atgagaggattcattaatagccattagatcaaattgagcgaatcagattaaaagctttatataaaattgattgcacatgatta 42294221  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 223 - 303
Target Start/End: Complemental strand, 5780716 - 5780635
Alignment:
Q  223 atgagaggactcattaatagccatt-agatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgat 303  Q
    ||||||||||||||| ||||||||| || ||||||| ||||| ||||||| || ||| ||||||||||| ||| ||||||||    
T  5780716 atgagaggactcatttatagccatttagttcaaattaaacggttcagatttaatgctccatataaaattaattacacatgat 5780635  T

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Target: chr7 (Bit Score: 178; Significance: 1e-95; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 357 - 558
Target Start/End: Complemental strand, 45432840 - 45432639
Alignment:
Q  357 gctccatgacaacaacaatggactttatatcccttgtttcttcaacttcataacaacaacaatggaattttaatcaaatctacaccacaattcgaagccc 456  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  45432840 gctccatcacaacaacaatggactttatatcccttgtttcttcaacttcataacaacagcaatggaattttaataaaatctacaccacaattcgaagccc 45432741  T
Q  457 attcatagtttggttttctcaactaaagacccattcttatcttcttccattctagatccggcagccgtgaatttttcaatcaagttgaaacccatttaca 556  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  45432740 attcatagtttggttttctcaactaaagacccgttcttatcttcttccattccagatccggcagccatgaatttttcaatcaagttgaaacccatttaca 45432641  T
Q  557 gt 558  Q
    ||    
T  45432640 gt 45432639  T

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Target: chr7; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 195 - 305
Target Start/End: Complemental strand, 45433010 - 45432892
Alignment:
Q  195 gggcatttcaagtgagaggattttttaaatgagagga--------ctcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataa 286  Q
    |||||||||||||||||||||||||||||||||||||        |||||||||||| |||||||||||||||| |||||||||||||||||||||||||    
T  45433010 gggcatttcaagtgagaggattttttaaatgagaggatgagaggactcattaatagctattagatcaaattgaatggatcagattaaaagcttcatataa 45432911  T
Q  287 aattgattgcacatgatta 305  Q
    |||||||||||||||||||    
T  45432910 aattgattgcacatgatta 45432892  T

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Target: chr7; HSP #3
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 580 - 625
Target Start/End: Complemental strand, 45432638 - 45432593
Alignment:
Q  580 cccctctttcttcgaccttgaattttgtaggatagattttctagct 625  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  45432638 cccctctttcttcgaccttgaattttgtaggatagattttctagct 45432593  T

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Target: chr1 (Bit Score: 146; Significance: 1e-76; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 14 - 171
Target Start/End: Complemental strand, 51163602 - 51163445
Alignment:
Q  14 tactcaccttaactaaataacaaatttctattgtattagacatttcaaagacaagcaaaaatatgaaaaatattactgttcaatttctctgagataggaa 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  51163602 tactcaccttaactaaataacaaatttctattgtattagacatttcaaagacaagcaaaaatatgaaaaatataactgttcaatttctctgagataggaa 51163503  T
Q  114 gatttgggggaggtcaatttgtttatctgtggaaatagtcctcctccattggaagact 171  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||    
T  51163502 gatttgggggaggtcaatttgtttatccgtggaaatagttctcctccattggaagact 51163445  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 223 - 304
Target Start/End: Complemental strand, 44769591 - 44769510
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    |||||||||| |||||||||||||||||||||||||  ||| ||||||| |||||| ||||| ||||| ||| |||||||||    
T  44769591 atgagaggacccattaatagccattagatcaaattgtgcgggtcagatttaaagctccatattaaattaattacacatgatt 44769510  T

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Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 224 - 304
Target Start/End: Original strand, 17172776 - 17172856
Alignment:
Q  224 tgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatt 304  Q
    ||||||||||||||||||||| |||||| ||||||   || |||||||||||||| ||| ||||||| ||| |||||||||    
T  17172776 tgagaggactcattaatagcctttagattaaattgtgtggctcagattaaaagctccatctaaaattaattacacatgatt 17172856  T

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Target: chr3 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 223 - 305
Target Start/End: Complemental strand, 17886 - 17804
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattgaacggatcagattaaaagcttcatataaaattgattgcacatgatta 305  Q
    |||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||  |||||||||| ||| ||||||||||    
T  17886 atgagaggactcattagtagcctttagatcaaattgtacggatcagattaaaagctcgatataaaattaattacacatgatta 17804  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 424 - 503
Target Start/End: Complemental strand, 20509064 - 20508984
Alignment:
Q  424 ttttaatcaaatcta--caccacaattcgaagcccattcatagtttggttttctcaactaaagacccattcttatcttcttc 503  Q
    |||||||||||||||  |||||||| ||||| ||||||||||||||   |||||||||| |||||||||| || ||||||||    
T  20509064 ttttaatcaaatctatacaccacaagtcgaaacccattcatagttt-actttctcaactgaagacccatttttttcttcttc 20508984  T

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Target: scaffold0285 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0285
Description:

Target: scaffold0285; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 231
Target Start/End: Complemental strand, 17586 - 17550
Alignment:
Q  195 gggcatttcaagtgagaggattttttaaatgagagga 231  Q
    ||||||||||| |||||||||||||||||||||||||    
T  17586 gggcatttcaaatgagaggattttttaaatgagagga 17550  T

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Target: scaffold0086 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 258
Target Start/End: Complemental strand, 8451 - 8416
Alignment:
Q  223 atgagaggactcattaatagccattagatcaaattg 258  Q
    ||||||||||||||||||| ||||||||||||||||    
T  8451 atgagaggactcattaataaccattagatcaaattg 8416  T

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Target: scaffold1370 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold1370
Description:

Target: scaffold1370; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 195 - 231
Target Start/End: Original strand, 203 - 239
Alignment:
Q  195 gggcatttcaagtgagaggattttttaaatgagagga 231  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  203 gggcatttcaaatgagaggactttttaaatgagagga 239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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