View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13137_high_6 (Length: 338)

Name: NF13137_high_6
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13137_high_6
NF13137_high_6
[»] chr3 (1 HSPs)
chr3 (52-338)||(48731952-48732238)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 52 - 338
Target Start/End: Complemental strand, 48732238 - 48731952
Alignment:
Q  52 taagccaatttgagggatgaaatgcaaggttttccctgtttgcattcctcattatcagttttggtttatacaggggttcgcccattcaattatggttgtc 151  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48732238 taagccaatttgagggatgaaatgcaaggttttccctgtttgcattcctcattatcagttttggttcatacaggggttcgcccattcaattatggttgtc 48732139  T
Q  152 tgaacagttcaccagtcaatcctgaaattgagttgcattcctccttcccctgatcaaagttctgactattttgtagtatatttatgtttgcattgatata 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48732138 tgaacagttcaccagtcaatcctgaaattgagttgcattcctccttcccctgatcaaagttctgactattttgtagtatatttatgtttgcattgatata 48732039  T
Q  252 tgcctagcatagcagcaggttttaactaaatgaggactaatgatcaaattgctttacttgtcttgaatagcagcttaagaaatgtgt 338  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48732038 tgcctagcatagcagcaggttttaactaaatgaggactaatgattaaattgctttacttgtcttgaatagcagcttaagaaatgtgt 48731952  T

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