View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13137_low_10 (Length: 299)
Name: NF13137_low_10
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13137_low_10 |
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| [»] chr8 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 19 - 299
Target Start/End: Complemental strand, 19786084 - 19785804
Alignment:
| Q |
19 |
tcgtgaccaattgtcatgagttcatcttaagaaggacgaagctctaggagtgaaatcaacacttcaagctcagttcaaagagaagcagaatgcccaaatg |
118 |
Q |
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| T |
19786084 |
tcgtgaccaattgtcataagttcatcttaagaaggacgaagctctaggagtgaaatcaacactttaagctcagttcaaagagaagcagaatggccaaatg |
19785985 |
T |
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| Q |
119 |
ttcgagcctcttgtagacaaagattccattttaagaatgagtatacgacaaatccttgataaaaatgagaatcctagcaaactccttgacttcatcaaaa |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19785984 |
ttcgagcctcttgtagacaaagattccattttaagaatgagcatacgataaatccttgataaaaatgagaatcctagcaaactccttgacttcatcaaaa |
19785885 |
T |
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| Q |
219 |
tatcatatccccaaaagttgaagagagaagacttggctacattaactagaaattgtaatgcaatatctcaaggacagttac |
299 |
Q |
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| T |
19785884 |
tatcatatccccaaaagttgaagagagaagacttggctgcattaactagaaattgtaatgcaatatctcaaggacagttac |
19785804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 42 - 299
Target Start/End: Complemental strand, 25534480 - 25534223
Alignment:
| Q |
42 |
atcttaagaaggacgaagctctaggagtgaaatcaacacttcaagctcagttcaaagagaagcagaatgcccaaatgttcgagcctcttgtagacaaaga |
141 |
Q |
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| T |
25534480 |
atcttaagaaggaagaagtgctaggagtgcaatcaacacttcaagcccagttcaaagagaagaagaataccctaatattcgagcctattgacgataaaga |
25534381 |
T |
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| Q |
142 |
ttccattttaagaatgagtatacgacaaatccttgataaaaatgagaatcctagcaaactccttgacttcatcaaaatatcatatccccaaaagttgaag |
241 |
Q |
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| T |
25534380 |
ttccattttaagaatgagtagacgacaaattcttgatgaaagtgagaacccttgcagactccctaactttatccagttgtcgtattcccaaaagatgaag |
25534281 |
T |
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| Q |
242 |
agagaagacttggctacattaactagaaattgtaatgcaatatctcaaggacagttac |
299 |
Q |
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| T |
25534280 |
agaaaagacatgactacatttgacagaagttgtaaggcactatttcaaggacggttac |
25534223 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 79 - 249
Target Start/End: Original strand, 32441988 - 32442158
Alignment:
| Q |
79 |
acttcaagctcagttcaaagagaagcagaatgcccaaatgttcgagcctcttgtagacaaagattccattttaagaatgagtatacgacaaatccttgat |
178 |
Q |
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| T |
32441988 |
acttcaaacccagttcaaagagaagctgaatgccccaatgttcaagcctcttgttgacgaagattccattttgagaatgagtagatgacaaatccttgaa |
32442087 |
T |
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| Q |
179 |
aaaaatgagaatcctagcaaactccttgacttcatcaaaatatcatatccccaaaagttgaagagagaaga |
249 |
Q |
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| T |
32442088 |
gaaagtgagaatcctcgcgagatcccttactacgtaaatttatcatatccccataagttgaagagagaaga |
32442158 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 159
Target Start/End: Original strand, 28586712 - 28586831
Alignment:
| Q |
40 |
tcatcttaagaaggacgaagctctaggagtgaaatcaacacttcaagctcagttcaaagagaagcagaatgcccaaatgttcgagcctcttgtagacaaa |
139 |
Q |
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| T |
28586712 |
tcatcttaagaaggaagaagcgctaggtgtgaaaccaacagttcaaacccagttcaaagagaagcagaatgccccaatgttcgagcctcttgttgataaa |
28586811 |
T |
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| Q |
140 |
gattccattttaagaatgag |
159 |
Q |
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| T |
28586812 |
gcttccattttgagagtgag |
28586831 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 72 - 203
Target Start/End: Original strand, 19577120 - 19577251
Alignment:
| Q |
72 |
aatcaacacttcaagctcagttcaaagagaagcagaatgcccaaatgttcgagcctcttgtagacaaagattccattttaagaatgagtatacgacaaat |
171 |
Q |
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|||||||||||||||| ||||||||||||||||||||| ||| ||| ||| |||| |||| ||||||||||||||||||| |||||||| ||||||||| |
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| T |
19577120 |
aatcaacacttcaagcccagttcaaagagaagcagaataccccaatattcatgcctattgtcgacaaagattccattttaataatgagtagacgacaaat |
19577219 |
T |
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| Q |
172 |
ccttgataaaaatgagaatcctagcaaactcc |
203 |
Q |
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| T |
19577220 |
tattgattaaagtgagaacccttgcaaactcc |
19577251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 40 - 189
Target Start/End: Original strand, 13250517 - 13250666
Alignment:
| Q |
40 |
tcatcttaagaaggacgaagctctaggagtgaaatcaacacttcaagctcagttcaaagagaagcagaatgcccaaatgttcgagcctcttgtagacaaa |
139 |
Q |
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||||||||||| ||| |||| ||||||||| || ||||||| ||| | |||||||||||| |||||||| ||| |||||||| |||| |||| |||||| |
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| T |
13250517 |
tcatcttaagatggaataagcgctaggagtgcaaacaacactacaatcccagttcaaagaggagcagaattccccaatgttcgggccttttgtcgacaaa |
13250616 |
T |
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| Q |
140 |
gattccattttaagaatgagtatacgacaaatccttgataaaaatgagaa |
189 |
Q |
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| T |
13250617 |
gattctattttaagaacaagtaaacatcaaattcttgatgaaagtgagaa |
13250666 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 40 - 96
Target Start/End: Complemental strand, 18829679 - 18829623
Alignment:
| Q |
40 |
tcatcttaagaaggacgaagctctaggagtgaaatcaacacttcaagctcagttcaa |
96 |
Q |
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||||| ||||||||| ||||| ||||||||| || ||||||||||||| |||||||| |
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| T |
18829679 |
tcatcataagaaggaagaagcactaggagtgcaaccaacacttcaagcccagttcaa |
18829623 |
T |
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