View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13137_low_2 (Length: 652)
Name: NF13137_low_2
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13137_low_2 |
 | |
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Alignment Details
Target: chr6 (Bit Score: 631; Significance: 0; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 1 - 639
Target Start/End: Complemental strand, 377160 - 376522
Alignment:
| Q |
1 |
caaatcacccatttcatcaatatttttggtacctttccttagctccactcttttggactctatatttgaatatataaattgatcaaattctttgcatgct |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
377160 |
caaatcacccatttcatcaatatttttggtacctttccttagctccactcttttggactctatatttgaatatataaattgatcaaattctttgcatgct |
377061 |
T |
|
| Q |
101 |
ttggtcatctttttctcttgaccaacttgaagtaattgttgcaacctccaaacacttcttggcacaacatgcctatagaatatgcattcttcaatttggt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
377060 |
ttggtcatctttttctcttgaccaacttgaagtaattgttgcaacctccaaacacttcttggcacaacatgcctatagaatatgcattcttcaatttggt |
376961 |
T |
|
| Q |
201 |
caaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgatt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
376960 |
caaaagccttctcacaagcaacgtctgggaagtcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaagcgatt |
376861 |
T |
|
| Q |
301 |
gaagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttga |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
376860 |
gaagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattttctcttga |
376761 |
T |
|
| Q |
401 |
aacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggctt |
500 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
376760 |
aacaattcaaagcttctttgtttaaaaatagagtgaagaagagacctattatatttccatgtctttgaatcagcgttgaatattccatctccaaaggctt |
376661 |
T |
|
| Q |
501 |
caaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcat |
600 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
376660 |
caaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattatgtgatgcacattcatggggtcactagtgatgaaataattcat |
376561 |
T |
|
| Q |
601 |
tttggtaaaccaaggtcccatgaactcaccactacctct |
639 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
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|
| T |
376560 |
tttggtaaaccaaggtcccatgaactcaccactacctct |
376522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 59 - 629
Target Start/End: Original strand, 347394 - 347964
Alignment:
| Q |
59 |
tctatatttgaatatataaattgatcaaattctttgcatgctttggtcatctttttctcttgaccaacttgaagtaattgttgcaacctccaaacacttc |
158 |
Q |
| |
|
|||||||||| ||||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||| |||||| ||| ||||||| ||||||||||| |
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|
| T |
347394 |
tctatatttgcatatacaaattgatcaaatactttgcatgctttggtcatttttttctcttcaccaatttgaagccatttttgcaacttccaaacacttt |
347493 |
T |
|
| Q |
159 |
ttggcacaacatgcctatagaatatgcattcttcaatttggtcaaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgca |
258 |
Q |
| |
|
| ||||| | ||| |||||||||||||| ||||||||||||| |||||| |||||||| || || || || || ||||| |||||||| || ||||| || |
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|
| T |
347494 |
taggcactatatgtctatagaatatgcactcttcaatttggttaaaagctttctcacacgcgacatcgggaaaatcaatcgaaagacaattgggatcaca |
347593 |
T |
|
| Q |
259 |
tccaagaactacagaacaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaagga |
358 |
Q |
| |
|
|||||||||||| ||||||||||| | |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
347594 |
tccaagaactacggaacaaatgttgttgaatgtgaaacgattgaagacatcttgtaaatccaccactgacccttgttgttgtacatggtcaaacaaagga |
347693 |
T |
|
| Q |
359 |
atcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttcc |
458 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
347694 |
atcaaacttctctccaacttgttttgaatgattttcttttgaaacaattcaaaatctctttgtttgaaaatagagtgaaaaagagacctattgtatttcc |
347793 |
T |
|
| Q |
459 |
atgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcattat |
558 |
Q |
| |
|
|| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||| ||||||| ||||||||| || |
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|
| T |
347794 |
atttctccgaatcagcgttgaatattccatctccaaaggcttcaaaaatctcatgaaattcttgaccctttacataattatcaaaacacttgctcatcat |
347893 |
T |
|
| Q |
559 |
gtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaactcac |
629 |
Q |
| |
|
||||||||| ||||| ||||||||||| | ||||| ||||| |||||||||||||||||||||||||||| |
|
|
| T |
347894 |
gtgatgcacgttcatagggtcactagtaaccaaatagttcatgttggtaaaccaaggtcccatgaactcac |
347964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 56 - 629
Target Start/End: Original strand, 356050 - 356623
Alignment:
| Q |
56 |
gactctatatttgaatatataaattgatcaaattctttgcatgctttggtcatctttttctcttgaccaacttgaagtaattgttgcaacctccaaacac |
155 |
Q |
| |
|
|||| |||||||| ||||| |||||||||| | ||||||||| |||||||| |||||||||| ||||| |||||| ||| ||||||| ||||||||| |
|
|
| T |
356050 |
gactttatatttgcatatacaaattgatcataggttttgcatgccttggtcatatttttctcttcaccaatttgaagccatttttgcaacttccaaacac |
356149 |
T |
|
| Q |
156 |
ttcttggcacaacatgcctatagaatatgcattcttcaatttggtcaaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatc |
255 |
Q |
| |
|
|| | ||||| ||| ||||||||||||| ||||| ||||||| |||||||||||||| || || || || || |||||||||||||| |||||||| |
|
|
| T |
356150 |
ttttaggcactttatgtctatagaatatgccctcttcgatttggttgaaagccttctcacacgcgacatcgggaaaatcaatggaaagacaattaggatc |
356249 |
T |
|
| Q |
256 |
gcatccaagaactacagaacaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgacccttgttgttgtacatggtccaacaaa |
355 |
Q |
| |
|
||||||||||| || ||||||||||| || |||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
356250 |
acatccaagaaccacggaacaaatgttgtcgaatgtgaaacgattgaagacatcttgtaaatccaccactgagccttgttgttgtacatggtccaacaaa |
356349 |
T |
|
| Q |
356 |
ggaatcaaacttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatt |
455 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| |||||||| |||||| |||| ||| ||||||||||||| |||||||||||| |||| |
|
|
| T |
356350 |
ggaatcaaacttttctccaacttgttttgaatgattttcttttgaaacatttcaaaatctcttattttcaaaatagagtgaaaaagagacctattgtatt |
356449 |
T |
|
| Q |
456 |
tccatgtctttgaatcagcgttgaatattccatctccaaaggcttcaaatatctcatgaaattcatgacccttcacataattgtcaaaacgcttgctcat |
555 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||| |||||| | |
|
|
| T |
356450 |
tccatgtctccgaatcagtgttgaatattccatctccaaaggcttcaaatatctcatgatattcatgacccttaacataattgtcaaaagacttgcttaa |
356549 |
T |
|
| Q |
556 |
tatgtgatgcacattcatggggtcactagtgatgaaataattcattttggtaaaccaaggtcccatgaactcac |
629 |
Q |
| |
|
|||||||||| || |||||||||||||||| ||||| ||||| ||||||||||||||||||||||||||| |
|
|
| T |
356550 |
catgtgatgcaagttgatggggtcactagtgaccaaatagttcatgctggtaaaccaaggtcccatgaactcac |
356623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 68 - 460
Target Start/End: Complemental strand, 337312 - 336917
Alignment:
| Q |
68 |
gaatatataaattgatcaaattctttgcatgctttggtcatctttttctcttgaccaacttgaagtaattgttgcaacctccaaacacttcttggcacaa |
167 |
Q |
| |
|
||||||| |||||||||||| |||||||||||| ||||| |||||||||| ||| | |||||| | ||||||| ||||||||| |||||| |
|
|
| T |
337312 |
gaatataggaattgatcaaatactttgcatgcttcagtcatttttttctcttcaccgatttgaagccaactttgcaacttccaaacacaagccggcacag |
337213 |
T |
|
| Q |
168 |
catgcctatagaatatgcattcttcaatttggtcaaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaac |
267 |
Q |
| |
|
|| || ||||| ||| |||||||| ||||| |||||||||||| || |||| || ||||| |||||||||||||| ||||| || |||||||| |
|
|
| T |
337212 |
tgtgtctgtagaagatggattcttcagcttggttaaaagccttctcgcacacaacttcagggaaatcaatggaaagacaattagggtcatgtccaagaat |
337113 |
T |
|
| Q |
268 |
tacagaacaaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgaccc---ttgttgttgtacatggtccaacaaaggaatcaaa |
364 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||| ||||||||| ||||| | ||| ||||||||||| |
|
|
| T |
337112 |
tattgaacaaatgttatcaaatgtgaagcgattgaacacgtcttgtaaatcgaccaccgacccattttgttgttgaacatgattcaataaaggaatcaat |
337013 |
T |
|
| Q |
365 |
cttctctccaacttgttttgaatgattttctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccat |
460 |
Q |
| |
|
| |||| | ||||| |||||||||||||||||||| ||||||||||||||||||||| | | | || |||||| |||||| ||||||||| |
|
|
| T |
337012 |
gatttctcaactttgttgtgaatgattttctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccat |
336917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 196 - 460
Target Start/End: Complemental strand, 341222 - 340955
Alignment:
| Q |
196 |
ttggtcaaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttaggatcgcatccaagaactacagaacaaatgttatcaaatgtgaag |
295 |
Q |
| |
|
||||| ||||||||||||| | | ||| || ||||| || | |||||||| || ||||| |||||||| || ||||||||||||| |||||||| |
|
|
| T |
341222 |
ttggttaaaagccttctcagatggaacttcggggaaatctgttgaaagacaatttggatcatgtccaagaattatcaaacaaatgttatcgaatgtgaat |
341123 |
T |
|
| Q |
296 |
cgattgaagacatcttgtaaatcaaccactgacccttgttgttgt---acatggtccaacaaaggaatcaaacttctctccaacttgttttgaatgattt |
392 |
Q |
| |
|
|||||||| |||||||||||||| ||||| ||||||| ||||||| ||||| | ||| | |||||||| | |||| | ||||| ||||| || | |
|
|
| T |
341122 |
cgattgaacacatcttgtaaatcgaccaccgaccctttttgttgtagaacatgattcaatattggaatcaatgatttctcaactttgttgtgaattatct |
341023 |
T |
|
| Q |
393 |
tctcttgaaacaattcaaagcttctttgtttgaaaatagagtgaagaagagacctattatatttccat |
460 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| | | | || |||||| |||||| ||||||||| |
|
|
| T |
341022 |
tctcttgaaaagcttcaaagcttctttgtttgaagagatattggagaagattcctattgtatttccat |
340955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 275 - 340
Target Start/End: Complemental strand, 332191 - 332126
Alignment:
| Q |
275 |
caaatgttatcaaatgtgaagcgattgaagacatcttgtaaatcaaccactgacccttgttgttgt |
340 |
Q |
| |
|
||||||||||| ||||||||||||||||| |||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
332191 |
caaatgttatcgaatgtgaagcgattgaatacatcttgtaaatcgaccatcgaccctttttgttgt |
332126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 251
Target Start/End: Complemental strand, 333049 - 332875
Alignment:
| Q |
77 |
aattgatcaaattctttgcatgctttggtcatctttttctcttgaccaacttgaagtaattgttgcaacctccaaacacttcttggcacaacatgcctat |
176 |
Q |
| |
|
|||| ||||||| |||||||||| | |||||| |||||||||| |||| |||||| ||| ||||| | || |||||| ||||| | || |||| |
|
|
| T |
333049 |
aatttatcaaatactttgcatgcctcggtcatttttttctcttccccaatttgaagccatttttgcatcttctaaacacaaacgggcacgatgtgtctat |
332950 |
T |
|
| Q |
177 |
agaatatgcattcttcaatttggtcaaaagccttctcacaagcaacgtctgggaattcaatggaaagacagttag |
251 |
Q |
| |
|
|||| |||||||||||| ||||| ||||||||||||||| ||||| | || || ||||| ||||||||||||| |
|
|
| T |
332949 |
agaagatgcattcttcagcttggttaaaagccttctcacacgcaacttgaggaaaatcaatagaaagacagttag |
332875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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