View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13137_low_4 (Length: 373)

Name: NF13137_low_4
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13137_low_4
NF13137_low_4
[»] chr3 (4 HSPs)
chr3 (1-369)||(49753967-49754321)
chr3 (310-367)||(45483744-45483801)
chr3 (308-369)||(39650531-39650592)
chr3 (85-123)||(53471563-53471601)
[»] chr6 (1 HSPs)
chr6 (305-369)||(20902839-20902903)
[»] chr8 (5 HSPs)
chr8 (311-369)||(42664126-42664184)
chr8 (30-61)||(36746506-36746537)
chr8 (195-261)||(41877396-41877462)
chr8 (308-369)||(10207928-10207989)
chr8 (328-369)||(41877562-41877603)
[»] chr4 (4 HSPs)
chr4 (306-368)||(47668882-47668944)
chr4 (328-369)||(20447741-20447782)
chr4 (308-369)||(55250568-55250629)
chr4 (315-366)||(35466540-35466591)
[»] chr2 (7 HSPs)
chr2 (311-368)||(33226606-33226663)
chr2 (310-367)||(19865995-19866052)
chr2 (310-367)||(19870896-19870953)
chr2 (310-367)||(19875797-19875854)
chr2 (311-369)||(43559753-43559811)
chr2 (227-292)||(18061209-18061275)
chr2 (85-134)||(42460832-42460881)
[»] chr1 (3 HSPs)
chr1 (308-369)||(44508194-44508255)
chr1 (306-369)||(41335995-41336058)
chr1 (29-94)||(30389784-30389850)
[»] chr5 (2 HSPs)
chr5 (311-369)||(29790694-29790752)
chr5 (197-289)||(29790550-29790643)
[»] chr7 (2 HSPs)
chr7 (195-261)||(34821200-34821266)
chr7 (223-261)||(47235880-47235918)
[»] scaffold0257 (1 HSPs)
scaffold0257 (226-309)||(16523-16607)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 1 - 369
Target Start/End: Original strand, 49753967 - 49754321
Alignment:
Q  1 acatggtttaggtgtagattaaggttttctttgttatagattaaaaaagtgatttttacttcaaatttttaaaaacgattattgtgaaaacttactcaaa 100  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  49753967 acatgatttaggtgtagattaaggttttctttgttataaattaaaaaagtgatttttacttcaaatttttaaaaacgattattgtgaaaacttactcaga 49754066  T
Q  101 agtagtataaattattttaaacttgtttgttatatttggtggcaaatgacttcacatcaatgaggcagcattgactacccnnnnnnncattctcgaataa 200  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||             |||| | ||||||        ||||||||||||    
T  49754067 agtagtataaattattttaaacttgtttgttatatttggtggcgaatgacttca-------------gcatcg-ctacccaaaaaaatattctcgaataa 49754152  T
Q  201 ttagtatagttttgaatgtcgttactccattaatatattattcggttattccaaacaatttgttggttctagaagggatgatattaaaataaatagtgat 300  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  49754153 ttagtatagttttgaatgtccttactccattaatatattattcggttattccaaacaatttgttggttctaaaagggatgatattaaaataaatagtgat 49754252  T
Q  301 aatgtatttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49754253 aatgtatttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 49754321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Complemental strand, 45483801 - 45483744
Alignment:
Q  310 cttaaaactttatggagttcaacttttataaataattattcttagattttattttctt 367  Q
    |||||||||| || |||  ||||||||||||||||||||| |||||||||||||||||    
T  45483801 cttaaaacttcatagagcacaacttttataaataattattgttagattttattttctt 45483744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 39650531 - 39650592
Alignment:
Q  308 ttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||||||||||||  |||||||||||||||||| |||  || |||||||||| ||||||||    
T  39650531 ttcttaaaactttacagagttcaacttttataaacaatctttgttagattttagtttcttcg 39650592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 85 - 123
Target Start/End: Complemental strand, 53471601 - 53471563
Alignment:
Q  85 tgaaaacttactcaaaagtagtataaattattttaaact 123  Q
    ||||||||||||||||| |||||||| ||||||||||||    
T  53471601 tgaaaacttactcaaaaatagtataagttattttaaact 53471563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 305 - 369
Target Start/End: Original strand, 20902839 - 20902903
Alignment:
Q  305 tatttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||| ||||||||| || |||||||||||||||| ||||||||| |||||||||||||||||||    
T  20902839 tatttgttaaaacttcatagagttcaacttttatacataattattgttagattttattttcttcg 20902903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 311 - 369
Target Start/End: Complemental strand, 42664184 - 42664126
Alignment:
Q  311 ttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||||||| || |||| ||||||||||||||||||||| |||||||||||||||||||    
T  42664184 ttaaaacttcatagagtacaacttttataaataattattgttagattttattttcttcg 42664126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 61
Target Start/End: Complemental strand, 36746537 - 36746506
Alignment:
Q  30 tttgttatagattaaaaaagtgatttttactt 61  Q
    ||||||||||||||||||||||||||||||||    
T  36746537 tttgttatagattaaaaaagtgatttttactt 36746506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 261
Target Start/End: Original strand, 41877396 - 41877462
Alignment:
Q  195 gaataattagtatagttttgaatgtcgttactccattaatatattattcggttattccaaacaattt 261  Q
    ||||||||| |||||||||| |||| | ||| |||||||||||||| | || || ||||||||||||    
T  41877396 gaataattaatatagttttgtatgtagctaccccattaatatattacttggctactccaaacaattt 41877462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 10207989 - 10207928
Alignment:
Q  308 ttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    |||||||||||| || | | | ||||||| |||||||||||| ||||||||||||| |||||    
T  10207989 ttcttaaaacttcatagggcttaacttttttaaataattattgttagattttatttgcttcg 10207928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 328 - 369
Target Start/End: Original strand, 41877562 - 41877603
Alignment:
Q  328 tcaacttttataaataattattcttagattttattttcttcg 369  Q
    |||||||||||||||||||||| ||||||| || ||||||||    
T  41877562 tcaacttttataaataattattgttagattatagtttcttcg 41877603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 306 - 368
Target Start/End: Complemental strand, 47668944 - 47668882
Alignment:
Q  306 atttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttc 368  Q
    ||||||||||||||||| |||||||||||||||||||||| ||  |||||||||| |||||||    
T  47668944 atttcttaaaactttatagagttcaacttttataaataatcatcgttagattttagtttcttc 47668882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 328 - 369
Target Start/End: Complemental strand, 20447782 - 20447741
Alignment:
Q  328 tcaacttttataaataattattcttagattttattttcttcg 369  Q
    |||||||||||||||||||||| |||||||||| ||||||||    
T  20447782 tcaacttttataaataattattgttagattttagtttcttcg 20447741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 308 - 369
Target Start/End: Original strand, 55250568 - 55250629
Alignment:
Q  308 ttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||||||| |||||  || |||||||| ||||||||||||| |||||||||| ||||||||    
T  55250568 ttcttaaaattttatatagctcaactttaataaataattattgttagattttagtttcttcg 55250629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 315 - 366
Target Start/End: Original strand, 35466540 - 35466591
Alignment:
Q  315 aactttatggagttcaacttttataaataattattcttagattttattttct 366  Q
    |||||||| |||| |||||||||| |||||||||| || |||||||||||||    
T  35466540 aactttatagagtacaacttttatgaataattattgttcgattttattttct 35466591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 311 - 368
Target Start/End: Complemental strand, 33226663 - 33226606
Alignment:
Q  311 ttaaaactttatggagttcaacttttataaataattattcttagattttattttcttc 368  Q
    ||||||||| || |||| ||||||||||||||||||||| ||||||||||||||||||    
T  33226663 ttaaaacttcatagagtacaacttttataaataattattgttagattttattttcttc 33226606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 19865995 - 19866052
Alignment:
Q  310 cttaaaactttatggagttcaacttttataaataattattcttagattttattttctt 367  Q
    |||||||||| || |||  ||||||||||||||||||||| |||||||||||||||||    
T  19865995 cttaaaacttcatagagcacaacttttataaataattattgttagattttattttctt 19866052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 19870896 - 19870953
Alignment:
Q  310 cttaaaactttatggagttcaacttttataaataattattcttagattttattttctt 367  Q
    |||||||||| || |||  ||||||||||||||||||||| |||||||||||||||||    
T  19870896 cttaaaacttcatagagcacaacttttataaataattattgttagattttattttctt 19870953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 310 - 367
Target Start/End: Original strand, 19875797 - 19875854
Alignment:
Q  310 cttaaaactttatggagttcaacttttataaataattattcttagattttattttctt 367  Q
    |||||||||| || |||  ||||||||||||||||||||| |||||||||||||||||    
T  19875797 cttaaaacttcatagagcacaacttttataaataattattgttagattttattttctt 19875854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 43559753 - 43559811
Alignment:
Q  311 ttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||||||| ||  ||| ||||||||||||||||||||| ||| |||||||||||||||    
T  43559753 ttaaaacttcataaagtacaacttttataaataattattgttaaattttattttcttcg 43559811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 292
Target Start/End: Complemental strand, 18061275 - 18061209
Alignment:
Q  227 ccattaatatattattcggttattccaaacaattt-gttggttctagaagggatgatattaaaataa 292  Q
    |||||||||||||||| ||||| |||||||||||| |||||||| |  || |||| |||||||||||    
T  18061275 ccattaatatattatttggttactccaaacaatttggttggttcaaagagagatgctattaaaataa 18061209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 134
Target Start/End: Original strand, 42460832 - 42460881
Alignment:
Q  85 tgaaaacttactcaaaagtagtataaattattttaaacttgtttgttata 134  Q
    |||||| |||||||||| ||||||||||||||| |||||  |||||||||    
T  42460832 tgaaaatttactcaaaaatagtataaattatttcaaactcatttgttata 42460881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 308 - 369
Target Start/End: Complemental strand, 44508255 - 44508194
Alignment:
Q  308 ttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||||||||||||| ||| |||||||||||||||||||||| | |||||||| ||||||||    
T  44508255 ttcttaaaactttatagagctcaacttttataaataattattttcagattttagtttcttcg 44508194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 306 - 369
Target Start/End: Original strand, 41335995 - 41336058
Alignment:
Q  306 atttcttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    |||| |||||| || || |||||||||||||||| ||||||||| |||||||||||||||||||    
T  41335995 atttgttaaaagttcatagagttcaacttttatacataattattgttagattttattttcttcg 41336058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 94
Target Start/End: Complemental strand, 30389850 - 30389784
Alignment:
Q  29 ctttgttatagattaaaaaa-gtgatttttacttcaaatttttaaaaacgattattgtgaaaactta 94  Q
    |||||||||||||||||||| ||||||||||||| | |||||||||   |||| || ||||||||||    
T  30389850 ctttgttatagattaaaaaaagtgatttttactttatatttttaaatctgatttttatgaaaactta 30389784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 311 - 369
Target Start/End: Original strand, 29790694 - 29790752
Alignment:
Q  311 ttaaaactttatggagttcaacttttataaataattattcttagattttattttcttcg 369  Q
    ||||||||| ||  ||| ||||||||||||||||||||| |||||||||||||||||||    
T  29790694 ttaaaacttcataaagtacaacttttataaataattattgttagattttattttcttcg 29790752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 197 - 289
Target Start/End: Original strand, 29790550 - 29790643
Alignment:
Q  197 ataattagtatagttttgaatgtcgttactccattaatatattattcggttattccaaacaa-tttgttggttctagaagggatgatattaaaa 289  Q
    ||||||||||||||||||||||| | |||  ||||||||||||||| ||  | ||||||||| ||||||||||  | ||| |||||| ||||||    
T  29790550 ataattagtatagttttgaatgtagctaccacattaatatattatttggccactccaaacaattttgttggtttaaaaagagatgattttaaaa 29790643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 261
Target Start/End: Complemental strand, 34821266 - 34821200
Alignment:
Q  195 gaataattagtatagttttgaatgtcgttactccattaatatattattcggttattccaaacaattt 261  Q
    |||||||||||||||||||| |||| | ||| ||||| |||||||| | | ||| ||||||||||||    
T  34821266 gaataattagtatagttttgtatgtagctaccccattgatatattacttgattactccaaacaattt 34821200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 223 - 261
Target Start/End: Original strand, 47235880 - 47235918
Alignment:
Q  223 tactccattaatatattattcggttattccaaacaattt 261  Q
    |||||||||||||||||||| || |||||||||||||||    
T  47235880 tactccattaatatattatttggctattccaaacaattt 47235918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 226 - 309
Target Start/End: Complemental strand, 16607 - 16523
Alignment:
Q  226 tccattaatatattattcggttattccaaacaattt-gttggttctagaagggatgatattaaaataaatagtgataatgtattt 309  Q
    ||||||||| |||||||   ||| |||||||||||| |||||||  |  |||||||||||||||| ||||| ||||||| |||||    
T  16607 tccattaatgtattatttaattactccaaacaattttgttggtttaaagagggatgatattaaaaaaaatattgataatttattt 16523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University