View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13137_low_5 (Length: 362)
Name: NF13137_low_5
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13137_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 49753838 - 49753491
Alignment:
| Q |
1 |
ataataataaattaaaaagtgacgattaatttgatgattgataataactnnnnnnnnnntgacgatttattccactcaaagacaaaagttatttaattaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49753838 |
ataataataaattaaaaagtgacgattaatttgatgattgataataactaaaaaaaaa-tgacgatttattccactcaaagacaaaagttatttaattaa |
49753740 |
T |
|
| Q |
101 |
gggaatttcaacaatgcttgaagagtattattcctgtgtttcccaacctttggttttgttttatattggcttagcttgtacactaagcattttatttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
49753739 |
gggaatttcaacaatgcttgaagagtattattcctgtgtttcccaacctttggttttgttttatattgacttagcttgtacactaagcactttatttttg |
49753640 |
T |
|
| Q |
201 |
gaatttcattatcgacattttctaaaccatttaactgtgatggtggggatgcttaattataatcaatgtaatcagagagatacgtagcagtgtcaacttg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49753639 |
gaatttcattatcgacattttctaaaccatttaactgtgatggtggggatgcttaattataatcaatgtaatcagagagatacgtagcagtgtcaacttg |
49753540 |
T |
|
| Q |
301 |
gtttatatggtggtagcatgtgggtggatatagctatagatgaaatatt |
349 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||| ||||||||| |
|
|
| T |
49753539 |
gtttatatggtggtggcatgtgggtggatatagctataggtgaaatatt |
49753491 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 49750193 - 49750154
Alignment:
| Q |
290 |
gtgtcaacttggtttatatggtggtagcatgtgggtggat |
329 |
Q |
| |
|
|||||| ||||||||||||||||||||| ||||||||||| |
|
|
| T |
49750193 |
gtgtcagcttggtttatatggtggtagcttgtgggtggat |
49750154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University