View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13137_low_6 (Length: 341)
Name: NF13137_low_6
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13137_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 247; Significance: 1e-137; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 13 - 323
Target Start/End: Complemental strand, 21580066 - 21579755
Alignment:
| Q |
13 |
aaaatctaaattccaacaccaaccaattactcatacctacgtaaccaattctacaaaccaatctccaacaaacaacacttttnnnnnnn-ctaatgacac |
111 |
Q |
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| T |
21580066 |
aaaatctaaattccaacaccaaccaattcttcatacctacgtaaccaattccacaaaccaatctccaacaaacaacactttcaaaaaaaactaatgacac |
21579967 |
T |
|
| Q |
112 |
tcttgaatctcttctttctattataccttttattaattccaacaagtggctatgttcaaccctttgaagatggtttcatctctggtgttatatctaacaa |
211 |
Q |
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|||||||||| |||||||||||| ||||| ||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
21579966 |
tcttgaatctattctttctattacaccttatattaattccaactagtggctatgttcaaccctttaaagatggtttcatctctggtgttatatctaacaa |
21579867 |
T |
|
| Q |
212 |
gggtcttgattttgctaaggatttgttgatagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccactt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21579866 |
gggtcttgattttgctaaggatttgttgatagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcatatgtcccactt |
21579767 |
T |
|
| Q |
312 |
gttggaaatgct |
323 |
Q |
| |
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|||||||||||| |
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| T |
21579766 |
gttggaaatgct |
21579755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 102 - 323
Target Start/End: Complemental strand, 21576359 - 21576138
Alignment:
| Q |
102 |
ctaatgacactcttgaatctcttctttctattataccttttattaattccaacaagtggctatgttcaaccctttgaagatggtttcatctctggtgtta |
201 |
Q |
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||||||| ||||||||||||||||||||||| | ||||| ||||||||||||||| | | | |||||||||||||||||||||||||||||||||| |
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| T |
21576359 |
ctaatgaaactcttgaatctcttctttctatcacaccttctattaattccaacaatcgcttctaaccaaccctttgaagatggtttcatctctggtgtta |
21576260 |
T |
|
| Q |
202 |
tatctaacaagggtcttgattttgctaaggatttgttgatagagaaatgtattgaaactattgttcttcttaagttacctaagattgagaatactgcata |
301 |
Q |
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|||| ||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||| |
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| T |
21576259 |
tatccaacaaaggtcttgattttgctaaggatttgttgatagagaaaggtattgaaactattgtttttgttaagttacctaagattgagaatactgcata |
21576160 |
T |
|
| Q |
302 |
tgtcccacttgttggaaatgct |
323 |
Q |
| |
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||| |||||||||||||||||| |
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| T |
21576159 |
tgttccacttgttggaaatgct |
21576138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 13 - 83
Target Start/End: Complemental strand, 21576473 - 21576400
Alignment:
| Q |
13 |
aaaatctaaattccaacaccaaccaattactcatacctacgtaaccaa-ttctacaaacc--aatctccaacaa |
83 |
Q |
| |
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|||||| ||||||||||||||||||||| || |||||||||||||||| ||||||||||| |||||||||||| |
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| T |
21576473 |
aaaatccaaattccaacaccaaccaattccttatacctacgtaaccaatttctacaaaccaaaatctccaacaa |
21576400 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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