View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13137_low_9 (Length: 300)
Name: NF13137_low_9
Description: NF13137
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13137_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-99; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 7259317 - 7259107
Alignment:
| Q |
1 |
aaggatacatgcaaaggaatgagatgtgaaaaaggtacattttgatacaattggaagaagcaaatcaagagagaaaattttatacttcgaagacaagtat |
100 |
Q |
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| T |
7259317 |
aaggatacatgcaaaggaatgtgatttgaaaaaggtacattttgatacaattggaagaagcaaatcaagagagaaaattttatactttgaagacaagtat |
7259218 |
T |
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| Q |
101 |
caagaaacaaaagttatgattcataattgaatgaaatatcatttgatgaaatgctaaagactagttagctctagaggtattttattgaagattttggttg |
200 |
Q |
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| T |
7259217 |
caagaaacaaaagttatgattcataattgaatgaaatatcatttattgaaatgctaaagactagttagctctaga-gtattttattgaagattttggttg |
7259119 |
T |
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| Q |
201 |
tgatatacttag |
212 |
Q |
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|||||||||||| |
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| T |
7259118 |
tgatatacttag |
7259107 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 206 - 287
Target Start/End: Complemental strand, 7258796 - 7258715
Alignment:
| Q |
206 |
tacttagtctttttctagtttggcttcaaattttatttgagctctttttgttgtctttattagtagatgtaatgttttttct |
287 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7258796 |
tacttggtctttttctagtttggcttcaaattttatttgagctctttttgttgtctttattagtagatgtaatgttttttct |
7258715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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