View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_high_14 (Length: 419)

Name: NF13138_high_14
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_high_14
NF13138_high_14
[»] chr4 (14 HSPs)
chr4 (17-407)||(11192424-11192814)
chr4 (55-402)||(11189884-11190233)
chr4 (19-324)||(11179186-11179491)
chr4 (52-252)||(11166205-11166405)
chr4 (11-362)||(11197622-11197957)
chr4 (17-297)||(11160539-11160837)
chr4 (19-328)||(11174532-11174856)
chr4 (146-220)||(5646597-5646671)
chr4 (146-220)||(11182099-11182173)
chr4 (207-286)||(11240855-11240934)
chr4 (372-402)||(11179541-11179571)
chr4 (20-70)||(11931879-11931929)
chr4 (21-113)||(6948070-6948162)
chr4 (146-218)||(11932023-11932095)
[»] chr5 (5 HSPs)
chr5 (17-101)||(36686791-36686875)
chr5 (157-324)||(36686949-36687116)
chr5 (146-218)||(8991411-8991483)
chr5 (17-113)||(35390400-35390496)
chr5 (146-218)||(8981906-8981978)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 17 - 407
Target Start/End: Original strand, 11192424 - 11192814
Alignment:
Q  17 atgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccactt 116  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  11192424 atgtaagatccaacagacttttgatgtttagatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagcgtcccactt 11192523  T
Q  117 cctaagctcatcagaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192524 cctaagctcatcagaacttacatcatcagcatgtttcttgcaatactcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtg 11192623  T
Q  217 tcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaagga 316  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  11192624 tcgttggcacagtcatcgtctatcaaaagcttgatcgtctgggattgcattgccaccgcctcttctatttcaaaggtctcgccctcataactcttaagga 11192723  T
Q  317 tgatcttcttcgacgacgatgatgccatgtctttgaaaccttaaatttgtatctatctctgagtttgaaaagaataggcgtgagtgagtat 407  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11192724 tgatcttcttcgacgacaatgatgccatgtctttgaaaccttaaatttgtatctatctctgagtttgaaaagaataggcgtgagtgagtat 11192814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 55 - 402
Target Start/End: Original strand, 11189884 - 11190233
Alignment:
Q  55 gcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtttct 154  Q
    |||||| ||||||| || ||||||||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||| ||||| |||||||||    
T  11189884 gcagccaagatgagtttcaagagagtatcttgatcgacctggacaaattcagcgtcccacttcctaagctcatcagaacttacagcatcaacatgtttct 11189983  T
Q  155 tgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgt 254  Q
    ||||||| |||||||||||||||||||||||||  ||||||||||||||||||||| ||||||| |||||||||| |||| | |||||| ||||||||||    
T  11189984 tgcaatactcaataaccatggccaagatcttgcctgttacgttcgaaatagggatttcagtgtcattggcacactggtcgccgatcaaatgcttgatcgt 11190083  T
Q  255 ctgggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttcttcgacgacgatgatgccatgtctttgaaa 354  Q
    ||| ||||| ||||||||| ||||||| ||||||||||||||||| ||| ||||||| |||||||||||||||   || ||||||||||||  || ||||    
T  11190084 ctgcgattgaactgccaccgcctcttcgatttcaaaggtctcgccttcagaactcttcaggatgatcttcttcattgatgatgatgccatgaattagaaa 11190183  T
Q  355 ccttaaa--tttgtatctatctctgagtttgaaaagaataggcgtgagtg 402  Q
    || ||||  ||||| ||| |||||||||||||||||||||||||||||||    
T  11190184 ccctaaatttttgtgtctttctctgagtttgaaaagaataggcgtgagtg 11190233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 19 - 324
Target Start/End: Original strand, 11179186 - 11179491
Alignment:
Q  19 gtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcc 118  Q
    ||||||||||| || || ||||||||||||||||| ||||||  |||||||||||||||||||| ||||||||||| |||||| |||| ||||||||||     
T  11179186 gtaagatccaataggctcttgatgtttaaatagttggcagccatgatgagattgaagagagtattttgatcaaccttgacaaattcagcgtcccacttct 11179285  T
Q  119 taagctcatcagaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 218  Q
     |||||||||||||||| || ||||| |||||||||||||||| ||||||||||| |||||||||||||  ||||| ||||  | |||||||||||||||    
T  11179286 caagctcatcagaacttgcagcatcaacatgtttcttgcaatactcaataaccatagccaagatcttgccagttacattcgttaaagggattccagtgtc 11179385  T
Q  219 gttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatg 318  Q
    |||||||||||| ||||| |||||| ||||||||||||||||||||| ||||||| ||| ||| |||| |||||||||||| ||| ||||||| | ||||    
T  11179386 gttggcacactcctcgtcgatcaaatgcttgatcgtctgggattgcattgccaccgccttttcgattttaaaggtctcgccatcagaactcttcaagatg 11179485  T
Q  319 atcttc 324  Q
    ||||||    
T  11179486 atcttc 11179491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 52 - 252
Target Start/End: Original strand, 11166205 - 11166405
Alignment:
Q  52 ttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcctaagctcatcagaacttacatcatcagcatgtt 151  Q
    ||||||||| ||||||| || ||||||||||||||||||| || | |||| |||| ||||||||||  ||| |||||||||||| || ||||| ||||||    
T  11166205 ttagcagccaagatgagtttcaagagagtatcttgatcaatcttgtcaaattcagcgtcccacttctcaagttcatcagaacttgcagcatcaacatgtt 11166304  T
Q  152 tcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgat 251  Q
    |||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||||| ||| ||||| |||| ||||||  |||||| ||| |||    
T  11166305 tcttgcaatactcaataaccatagccaagatcttgccggttacgttcgaaatagggattccaatgtggttggtacacccgtcgtggatcaaatgctcgat 11166404  T
Q  252 c 252  Q
    |    
T  11166405 c 11166405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 11 - 362
Target Start/End: Original strand, 11197622 - 11197957
Alignment:
Q  11 tcatcaatgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtc 110  Q
    ||||||||||||||||||| ||||| || ||||  |||||||||| || |||||||||| |||| | |||||||||||||| |||||| || |||| |||    
T  11197622 tcatcaatgtaagatccaaaagactcttaatgtccaaatagttagaagtcgagatgagactgaacatagtatcttgatcaa-ctggacgaattcagcgtc 11197720  T
Q  111 ccacttcctaagctcatcagaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggatt 210  Q
    ||| ||||||||| ||||| |||||  | ||| | |||||||||||||||| ||||||| ||| ||||||||||||   |||  ||||||||||| ||||    
T  11197721 ccaattcctaagcccatcataacttttagcattaacatgtttcttgcaatactcaataaacatagccaagatcttgtcagttgtgttcgaaatagtgatt 11197820  T
Q  211 ccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactct 310  Q
    ||| | | ||||||||| || | ||  |||||| |||||||||||| |||||||                  ||||||||||||||||||||||||||||    
T  11197821 ccatttttgttggcacattcattgttgatcaaatgcttgatcgtctaggattgc------------------atttcaaaggtctcgccctcataactct 11197902  T
Q  311 taaggatgatcttctt---cgacgacgatgatgccatgtctttgaaaccttaaat 362  Q
    | ||||||||||||||    ||||| |||||||||||| |||||||||| |||||    
T  11197903 tcaggatgatcttctttgaggacgatgatgatgccatgactttgaaaccgtaaat 11197957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 17 - 297
Target Start/End: Complemental strand, 11160837 - 11160539
Alignment:
Q  17 atgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccactt 116  Q
    |||||||||||| ||||||||||||||||| |||||| |||||| ||||||||| |||||| |||||||| ||||||| ||| || ||||||||||| ||    
T  11160837 atgtaagatccagcagacttttgatgtttagatagtttgcagccaagatgagatcgaagagggtatcttggtcaaccttgacgaattcagtgtcccattt 11160738  T
Q  117 cctaa---------------gc---tcatcagaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttc 198  Q
      |||               ||   |||||||||||   | | ||| |||| ||||||||||  ||||||||||| ||||||||||||| ||| |||||     
T  11160737 gttaatttcatcttcagagggcttttcatcagaactggtagcgtcaacatgcttcttgcaatgctcaataaccatagccaagatcttgccggtaacgttt 11160638  T
Q  199 gaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcg 297  Q
    | || |||||||||| |||||| |||||| | ||| || |||||| |||||||||| || ||||  | ||||||| ||| ||| ||||| |||||||||    
T  11160637 ggaagagggattccactgtcgtcggcacaattgtcatcgatcaaatgcttgatcgtttgagattctaatgccaccgccttttcaatttcgaaggtctcg 11160539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 19 - 328
Target Start/End: Complemental strand, 11174856 - 11174532
Alignment:
Q  19 gtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtcccacttcc 118  Q
    ||||||||||| ||||| |||||||| ||||||||||||||| ||||||||| |||||| || ||||||||||||||||| || ||||  |||||||||     
T  11174856 gtaagatccaaaagactcttgatgttcaaatagttagcagccaagatgagatcgaagagggtttcttgatcaacctggacgaattcagcatcccacttct 11174757  T
Q  119 taagctcatc------------------agaacttacatcatcagcatgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcga 200  Q
    |||| |||||                   || ||| |||  ||| |||||||||||||||| || |||||| | |||||||||||||  ||||| ||||     
T  11174756 taagttcatcctccggtggtttttcattggatcttgcatattcaacatgtttcttgcaatactcgataaccttagccaagatcttgccagttacattcgg 11174657  T
Q  201 aatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctatttcaaaggtctcgccc 300  Q
    |||||||||||||||||||| ||   |  | || || |||||| ||||||| || || ||||  | ||||||  ||||||| || |||||||| || ||     
T  11174656 aatagggattccagtgtcgtcgg---aaacatcatcgatcaaatgcttgatagtttgagattctaatgccactgcctcttcgatatcaaaggtttcaccg 11174560  T
Q  301 tcataactcttaaggatgatcttcttcg 328  Q
    ||||||||||| ||| ||||||||||||    
T  11174559 tcataactcttgagggtgatcttcttcg 11174532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 5646671 - 5646597
Alignment:
Q  146 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 220  Q
    |||||||||||||||| ||||| ||||| ||||  |||| |||||||||||| || |||||||||||||||||||    
T  5646671 catgtttcttgcaatactcaattaccatagccagaatctcgctggttacgtttgagatagggattccagtgtcgt 5646597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 11182173 - 11182099
Alignment:
Q  146 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgt 220  Q
    |||||||||||||||| || |||||| | |||||||||||||  ||||| |||| ||||||||||||||||||||    
T  11182173 catgtttcttgcaatactcgataaccttagccaagatcttgccagttacattcggaatagggattccagtgtcgt 11182099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 207 - 286
Target Start/End: Original strand, 11240855 - 11240934
Alignment:
Q  207 gattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtctgggattgcactgccaccacctcttctattt 286  Q
    ||||||| |||||||| |||||||||| || |||||| ||||||| || ||||||| ||  |||||||||||||| ||||    
T  11240855 gattccaatgtcgttgacacactcgtcatcaatcaaatgcttgatagtatgggattccaaagccaccacctcttcaattt 11240934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 372 - 402
Target Start/End: Original strand, 11179541 - 11179571
Alignment:
Q  372 tctctgagtttgaaaagaataggcgtgagtg 402  Q
    |||||||||||||||||||||||||||||||    
T  11179541 tctctgagtttgaaaagaataggcgtgagtg 11179571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 20 - 70
Target Start/End: Original strand, 11931879 - 11931929
Alignment:
Q  20 taagatccaacagacttttgatgtttaaatagttagcagccgagatgagat 70  Q
    |||||||||| ||||| ||||||| ||||||||| ||||||||||| ||||    
T  11931879 taagatccaatagactcttgatgtctaaatagttggcagccgagataagat 11931929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 113
Target Start/End: Original strand, 6948070 - 6948162
Alignment:
Q  21 aagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtccca 113  Q
    ||||||||| ||||| ||||| || | |||| |||||||| |||||||||||||||  ||| | | ||||||||  || || |||||||||||    
T  6948070 aagatccaagagactcttgatattcagatagctagcagcccagatgagattgaagatcgtaacattatcaacctttacgaattcagtgtccca 6948162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Original strand, 11932023 - 11932095
Alignment:
Q  146 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 218  Q
    |||| ||||||||||| ||||||||| | ||||||||| | | |||||| |  ||||||||||||| ||||||    
T  11932023 catgcttcttgcaatactcaataaccttcgccaagatcctcccggttacctcagaaatagggattctagtgtc 11932095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 17 - 101
Target Start/End: Original strand, 36686791 - 36686875
Alignment:
Q  17 atgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaa 101  Q
    |||||||||||||||   | |||||||| |||||||| ||||||||||| |||| || ||| |||||||||||||||| ||||||    
T  36686791 atgtaagatccaacaagttcttgatgttcaaatagtttgcagccgagatcagatcgaggagtgtatcttgatcaaccttgacaaa 36686875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 157 - 324
Target Start/End: Original strand, 36686949 - 36687116
Alignment:
Q  157 caatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtcgttggcacactcgtcgtctatcaaaagcttgatcgtct 256  Q
    ||||||||||||||| | |||||||| ||||| ||||| || |||| |||||||||| | | || | |||| || || || || ||||| |||||||| |    
T  36686949 caatattcaataacctttgccaagatgttgctagttacatttgaaagagggattccactatagtcgacacaatcatcctcgattaaaagtttgatcgttt 36687048  T
Q  257 gggattgcactgccaccacctcttctatttcaaaggtctcgccctcataactcttaaggatgatcttc 324  Q
    | |||| || ||||||  |||| || |||||||||||||| || ||  ||||||| ||| ||||||||    
T  36687049 gtgattccaatgccactgcctcgtcgatttcaaaggtctccccgtcggaactcttcagggtgatcttc 36687116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 8991483 - 8991411
Alignment:
Q  146 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 218  Q
    |||| ||||||||||| ||||| ||| | ||||||||||||||||| ||||| | || |||||||||| ||||    
T  8991483 catgcttcttgcaatactcaatcaccttcgccaagatcttgctggtaacgttgggaagagggattccactgtc 8991411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 113
Target Start/End: Original strand, 35390400 - 35390496
Alignment:
Q  17 atgtaagatccaacagacttttgatgtttaaatagttagcagccgagatgagattgaagagagtatcttgatcaacctggacaaactcagtgtccca 113  Q
    |||||||||||||||  || |||||||| |||||||| |||| | ||||||||| || ||| ||| | |||||||||| ||  || |||||||||||    
T  35390400 atgtaagatccaacaagctcttgatgttcaaatagtttgcagacaagatgagatcgaggagcgtagcctgatcaaccttgatgaattcagtgtccca 35390496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 146 - 218
Target Start/End: Complemental strand, 8981978 - 8981906
Alignment:
Q  146 catgtttcttgcaatattcaataaccatggccaagatcttgctggttacgttcgaaatagggattccagtgtc 218  Q
    |||| ||||||||||| ||||| ||| | ||||||||||| ||||| ||||| | || |||||||||| ||||    
T  8981978 catgcttcttgcaatactcaatcaccttcgccaagatcttactggtaacgttgggaagagggattccactgtc 8981906  T

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