View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_16 (Length: 409)
Name: NF13138_high_16
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_16 |
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Alignment Details
Target: chr5 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 2 - 399
Target Start/End: Original strand, 39984029 - 39984420
Alignment:
| Q |
2 |
atatatacgacgagagtggttgttgattgagatggattaaatttccatattagaggttagacaaccattcatgcaactaaaatacatatataggtttttc |
101 |
Q |
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| T |
39984029 |
atatatacgacgagagtggttgttgattgagatggattaaatttccatattagaggttagacaaccattcatgcaaccaaaatacatatataggtttttc |
39984128 |
T |
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| Q |
102 |
tcnnnnnnnnnnnnnnnnntacatatataggtcgttaatacgtttagttgattatgcttgcttagtccaaattttttaaaagacttgctaacatgttttc |
201 |
Q |
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| T |
39984129 |
tcaaaaataaaaa------tacatatataggtggttaatacgtttagttgattatgcttgcttagtccaaattttttaaaagacttgctaacatgttttc |
39984222 |
T |
|
| Q |
202 |
ctaaggcattattatttannnnnnngacattgaaaaatttattattttatctactcaaaagagaaattttaagcttttaaagattttaatatacgagttt |
301 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
39984223 |
ctaaggcattattatttattttcttgacattgaaaaatttattattttatctactcaaaagagaaattttaagcttttaaagaatttaatatacgagttt |
39984322 |
T |
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| Q |
302 |
caagaaattatttggtaaaaaagtcttcatgagtccaatagcgtaaacatgaaacacgctttaaatcaagcatgtgcaatgtagcgtaagcatctgtg |
399 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
39984323 |
caagaaattatttagtaaaaaagtcttcatgagtccaatagcgtaaacatgaagcacgctttaaatcaagcatgtgcaatgtagcgtaagcatgtgtg |
39984420 |
T |
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