View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_17 (Length: 403)
Name: NF13138_high_17
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_17 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 18 - 403
Target Start/End: Complemental strand, 1896733 - 1896348
Alignment:
| Q |
18 |
ctttagtgaatattgatgataaaagggttaaagggaatccctgaattcaagcattttagtctctgaaatccaaccgcactttggtatagttgtaaccgaa |
117 |
Q |
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| T |
1896733 |
ctttagtgaatattgatgataaaagggttaaagggaatccctgaattcaagcattttagtctctgaaatccaaccgcactttggtatagttgtaaccgaa |
1896634 |
T |
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| Q |
118 |
agggaagacctcatcatacatttttggtatttggtgtttgtgtcctcttccactccaagcaaaatggtgtagcatagcaccatatgcatataattcacat |
217 |
Q |
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| T |
1896633 |
agggaagacctcatcatacatttatggtatttggtgtttgtgtcctcttccactccaagcaaaatggtgtagcatagcaccatatgcatataattcacat |
1896534 |
T |
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| Q |
218 |
attatacataaattattgctctcttttaaattttcaagtctttttatccttcttttagcttttgaacaaatgcacgggtgtaatatattagactgtatga |
317 |
Q |
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| T |
1896533 |
attatacataaattattgctctcttttaaattttcaagtctttatatccttcttttagcttttgaacaaatgcacgggtgtaatatattagactgtatga |
1896434 |
T |
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| Q |
318 |
ttgtagttagtgggtttaaaatgggtgttgcaattgatggatgtagcattttgcataattctctctttatttttatttgtcagatg |
403 |
Q |
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| T |
1896433 |
ttgtagttagtgggtttaaaatgggtgttgcaattgatggatgtagcattttgcataattctctctttatttttatttgtcagatg |
1896348 |
T |
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