View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_18 (Length: 393)
Name: NF13138_high_18
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 283; Significance: 1e-158; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 16 - 373
Target Start/End: Original strand, 45205639 - 45205993
Alignment:
| Q |
16 |
gaacctgtgagcctctgaggcgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaataga |
115 |
Q |
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| T |
45205639 |
gaacctatgagcctctgaggcgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaagaga |
45205738 |
T |
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| Q |
116 |
aaatgacctgcataattacaataattcataaataaaatcagaaatattgcttcttctcatcctatgtattaaaagatacagtcaaattctcaacaaacnn |
215 |
Q |
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| T |
45205739 |
aaatgacctgcgtaattacaataattcataaataaaatcagaaatattgcttcttctcatcctatgtattaaaagatacagtaaaattctcaacaaa--- |
45205835 |
T |
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| Q |
216 |
nnnnnncagtaaaatagttacttgatgtgttacataagttgattgagatggatcagaagtgtaaattacacatatttcaatgatgtacaaactatcactt |
315 |
Q |
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| T |
45205836 |
aaaaaacagtaaaatagttacttgatgtgttacataagttgattgagatggatcagaagtgtaaattacacatatttcagtgatgtacaaactatcactt |
45205935 |
T |
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| Q |
316 |
ttatccccgatattgtt-aattctttgaattaaaaatcaataaaaacacatgtcctgtg |
373 |
Q |
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| T |
45205936 |
ttatccctgatattgttaaattctttgaattagaaatcaat-aaaacacatgtcctgtg |
45205993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 45247291 - 45247389
Alignment:
| Q |
37 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
135 |
Q |
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| T |
45247291 |
gacattaacaattcttccttctttcttactttggtgtgctgtttttttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgcacaattaca |
45247389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 37 - 135
Target Start/End: Original strand, 45231456 - 45231554
Alignment:
| Q |
37 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctgcataattaca |
135 |
Q |
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| T |
45231456 |
gacattaacaattcttccttcttttttactttggtgtgctgttttcttcattgtgtccaacaaaagatttgtcaagagaaaatgacctgtacaattaca |
45231554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 21 - 125
Target Start/End: Original strand, 45212504 - 45212608
Alignment:
| Q |
21 |
tgtgagcctctgaggcgacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatg |
120 |
Q |
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| T |
45212504 |
tgtgagcttctgaggagacattaacaattcttccttcagtcttactttcactagctgttttcttcatagtgtccaacaaaagatttgtcaagagaaaatg |
45212603 |
T |
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| Q |
121 |
acctg |
125 |
Q |
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||||| |
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| T |
45212604 |
acctg |
45212608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 19277418 - 19277506
Alignment:
| Q |
37 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
125 |
Q |
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| T |
19277418 |
gacattaataattcttccttctttcttgctttcatttgctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctg |
19277506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 37 - 125
Target Start/End: Original strand, 19294849 - 19294937
Alignment:
| Q |
37 |
gacattaacaattcttccttctttcttacttttgcgtgttgttttcttcatagtatccaacaaaagatttgtcaatagaaaatgacctg |
125 |
Q |
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| T |
19294849 |
gacaataataattcttccttctttcttgctttcattagctgttttcttcatagtgtctaacaaaaggtttgttaaaagaaaatgacctg |
19294937 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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