View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_high_19 (Length: 382)

Name: NF13138_high_19
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_high_19
NF13138_high_19
[»] chr2 (16 HSPs)
chr2 (1-226)||(1895402-1895627)
chr2 (2-226)||(17281850-17282075)
chr2 (8-226)||(1551510-1551728)
chr2 (1-224)||(17375271-17375494)
chr2 (113-226)||(3921584-3921697)
chr2 (303-374)||(1895254-1895325)
chr2 (307-368)||(1551809-1551870)
chr2 (309-366)||(17282158-17282215)
chr2 (153-226)||(34660278-34660351)
chr2 (307-366)||(3921444-3921503)
chr2 (307-364)||(17375153-17375210)
chr2 (51-103)||(3921684-3921736)
chr2 (307-366)||(4869507-4869566)
chr2 (32-98)||(4869709-4869775)
chr2 (153-226)||(4869637-4869710)
chr2 (313-365)||(14950835-14950887)
[»] chr6 (5 HSPs)
chr6 (8-226)||(20740570-20740788)
chr6 (1-226)||(21881459-21881684)
chr6 (303-368)||(20740453-20740518)
chr6 (307-366)||(21881318-21881377)
chr6 (313-365)||(32747716-32747768)
[»] chr4 (18 HSPs)
chr4 (4-226)||(53202258-53202480)
chr4 (1-229)||(47518356-47518584)
chr4 (4-226)||(23054142-23054363)
chr4 (46-204)||(6410005-6410164)
chr4 (135-226)||(34227057-34227148)
chr4 (307-366)||(53202118-53202177)
chr4 (307-366)||(47518662-47518721)
chr4 (303-371)||(23054441-23054508)
chr4 (307-368)||(34227204-34227265)
chr4 (156-221)||(12469342-12469407)
chr4 (313-365)||(45873102-45873154)
chr4 (319-362)||(12489216-12489259)
chr4 (62-108)||(24957572-24957618)
chr4 (156-204)||(12466698-12466746)
chr4 (313-365)||(14441115-14441167)
chr4 (313-363)||(12130516-12130566)
chr4 (313-365)||(38093215-38093267)
chr4 (313-365)||(55728692-55728744)
[»] chr5 (25 HSPs)
chr5 (2-226)||(7766911-7767135)
chr5 (1-229)||(18696922-18697152)
chr5 (5-226)||(27169997-27170219)
chr5 (116-203)||(41355543-41355630)
chr5 (303-366)||(38958379-38958442)
chr5 (307-362)||(41355722-41355777)
chr5 (32-98)||(7271894-7271960)
chr5 (2-103)||(41355452-41355553)
chr5 (155-226)||(38958230-38958301)
chr5 (160-226)||(7271826-7271892)
chr5 (153-226)||(6030388-6030461)
chr5 (307-366)||(7271708-7271767)
chr5 (32-98)||(6030323-6030389)
chr5 (32-98)||(26656829-26656895)
chr5 (32-98)||(26928416-26928482)
chr5 (307-361)||(27170275-27170329)
chr5 (313-365)||(26331217-26331269)
chr5 (307-366)||(26656630-26656688)
chr5 (307-366)||(26928217-26928275)
chr5 (307-362)||(40599985-40600040)
chr5 (327-365)||(42221388-42221426)
chr5 (307-362)||(7767203-7767255)
chr5 (313-365)||(24867205-24867257)
chr5 (153-203)||(26656780-26656830)
chr5 (153-203)||(26928367-26928417)
[»] chr8 (8 HSPs)
chr8 (3-229)||(10408814-10409040)
chr8 (2-226)||(5994622-5994846)
chr8 (46-226)||(6444027-6444208)
chr8 (313-365)||(5994485-5994537)
chr8 (307-366)||(10408702-10408761)
chr8 (313-365)||(15050162-15050214)
chr8 (318-362)||(3763045-3763089)
chr8 (313-365)||(25142902-25142954)
[»] chr7 (4 HSPs)
chr7 (3-226)||(3302567-3302790)
chr7 (307-366)||(11698554-11698613)
chr7 (307-366)||(3302427-3302486)
chr7 (313-365)||(31039000-31039052)
[»] chr1 (16 HSPs)
chr1 (2-199)||(34117991-34118190)
chr1 (2-103)||(34655070-34655171)
chr1 (40-203)||(11407928-11408092)
chr1 (113-229)||(34654967-34655083)
chr1 (1-104)||(39708927-39709029)
chr1 (307-366)||(34654830-34654889)
chr1 (115-225)||(26236671-26236781)
chr1 (113-203)||(39709015-39709105)
chr1 (32-98)||(615825-615891)
chr1 (153-226)||(615753-615826)
chr1 (303-366)||(39709180-39709243)
chr1 (308-368)||(34117896-34117955)
chr1 (307-360)||(615638-615691)
chr1 (313-362)||(11814695-11814744)
chr1 (313-361)||(2077483-2077531)
chr1 (313-365)||(14351174-14351226)
[»] chr3 (6 HSPs)
chr3 (153-226)||(18269763-18269836)
chr3 (307-366)||(43275830-43275890)
chr3 (319-371)||(18269919-18269971)
chr3 (45-98)||(18269711-18269764)
chr3 (313-362)||(31699221-31699270)
chr3 (152-198)||(43275999-43276045)
[»] scaffold0157 (1 HSPs)
scaffold0157 (319-362)||(31218-31261)
[»] scaffold0027 (1 HSPs)
scaffold0027 (313-365)||(2938-2989)


Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 1895627 - 1895402
Alignment:
Q  1 tcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattg 100  Q
    ||||||||||||||||||| |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1895627 tcggtggttgtttggtttttgtgggtctcagactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattg 1895528  T
Q  101 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 200  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1895527 atcggtcatgatggtggtgatgagtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggt 1895428  T
Q  201 ggttttcttggtggtactgattttgg 226  Q
    |||||||||||||||| |||||||||    
T  1895427 ggttttcttggtggtattgattttgg 1895402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 158; E-Value: 5e-84
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 17281850 - 17282075
Alignment:
Q  2 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 101  Q
    ||||||||||||| ||||||| ||| ||| |||||||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||    
T  17281850 cggtggttgtttgtttttcgtaggtctcagactatttgatttgttttctctcttggtagtggtggaggttatgtttgctcgcaacataggtggtgatgga 17281949  T
Q  102 tcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttag-tttgtggtacttcatggt 200  Q
    || ||||  ||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  17281950 tcagtcacaatggtggtgatggatcatatctaggtttgcttatgaacttatatggtttcgatggatctttggttgtgttggttttgtggtacttcatggt 17282049  T
Q  201 ggttttcttggtggtactgattttgg 226  Q
    ||||||||||||||| ||||||||||    
T  17282050 ggttttcttggtggtgctgattttgg 17282075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 8 - 226
Target Start/End: Original strand, 1551510 - 1551728
Alignment:
Q  8 ttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 107  Q
    ||||||| ||||||||||| ||| |||||||||||| |||||||| |||||||||||||| ||||||| |||||||||||||||||||||| |||| |||    
T  1551510 ttgtttgattttcgtgggtctcagactatttgatttgttttctctattggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatcagtc 1551609  T
Q  108 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 207  Q
    | |||||||||||||| |||| | ||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||    
T  1551610 acgatggtggtgatggatcatgtataggttcgcttatgaacttatatagtttcgatggatctttggttgtgttggtttgtggtacttcgtggtggttttc 1551709  T
Q  208 ttggtggtactgattttgg 226  Q
    ||||| || ||||||||||    
T  1551710 ttggtagtgctgattttgg 1551728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 17375494 - 17375271
Alignment:
Q  1 tcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattg 100  Q
    |||||||||||||||||||||||| | ||| |||||||||||  |||||||| |||||||||||||||||||||| ||||| |||||||||||||||| |    
T  17375494 tcggtggttgtttggttttcgtggctctcacactatttgattcgttttctctattggttgtggtggaggttatgtttgctcacaacataggtggtgatgg 17375395  T
Q  101 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 200  Q
    |||| ||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| ||||||||||||||| ||||||||| |||||||      
T  17375394 atcgatcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatgac 17375295  T
Q  201 ggttttcttggtggtactgatttt 224  Q
     |||||| ||||||| ||||||||    
T  17375294 agttttcatggtggtgctgatttt 17375271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 3921697 - 3921584
Alignment:
Q  113 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 212  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||| |||||||||||||||    
T  3921697 ggtggtgatggatcatatctaagttcgcttatgaacttatatggttttgatggatgtttggttgtgttggtttgtggtacttcacggtggttttcttggt 3921598  T
Q  213 ggtactgattttgg 226  Q
    ||| ||||||||||    
T  3921597 ggtgctgattttgg 3921584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 1895325 - 1895254
Alignment:
Q  303 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatgatg 374  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||    
T  1895325 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtgttcaatggtagttttggtgatggtgatg 1895254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 1551809 - 1551870
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 368  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  1551809 tgttgcttttaggtgagggttaatggtgatttttgaggtggtcaatggtagttttggtgatg 1551870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 17282158 - 17282215
Alignment:
Q  309 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  17282158 ttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtaggtttggtga 17282215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 34660351 - 34660278
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  34660351 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 34660278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 3921503 - 3921444
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||    
T  3921503 tgttgcttttaggtgagggttaatggtgatttttgtggtggtaaatagtagttttggtga 3921444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 364
Target Start/End: Complemental strand, 17375210 - 17375153
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggt 364  Q
    |||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||    
T  17375210 tgttgctttttggtgagggttaattgtggtttttgtggtggtcaatggtagttttggt 17375153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 51 - 103
Target Start/End: Complemental strand, 3921736 - 3921684
Alignment:
Q  51 ctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 103  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||| ||||    
T  3921736 ctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggatc 3921684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 4869566 - 4869507
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||  |||| ||||||||||| |||||||||||||||||||||||||| ||||    
T  4869566 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtagtttttgtga 4869507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 4869775 - 4869709
Alignment:
Q  32 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||  |||||||||||||||| ||||||||||| || || | |||||||||||||||||    
T  4869775 actatttgattcgttttctctcttggttgcggtggaggttacgtttgatagcaacataggtggtgat 4869709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 4869710 - 4869637
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    ||||||| ||||||||||||||||| || ||||| ||| |||||||| ||||||| || |||| ||||||||||    
T  4869710 atggttttgatggatctttggttgttttggtttgcggtgcttcatggcggttttcatgatggtgctgattttgg 4869637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 14950835 - 14950887
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  14950835 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 14950887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 171; Significance: 1e-91; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 8 - 226
Target Start/End: Complemental strand, 20740788 - 20740570
Alignment:
Q  8 ttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatcggtc 107  Q
    ||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||||||| ||| ||||    
T  20740788 ttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggatgttatgtttgctcgcaacataggtggtgatggattggtc 20740689  T
Q  108 atgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttc 207  Q
    | |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||    
T  20740688 acgatggtggtgatggatcatatctaggttcggttatgaacttatatggtttcgatggatctttggttgtgttggtttatggtacttcatggtggttttc 20740589  T
Q  208 ttggtggtactgattttgg 226  Q
    |||||||| ||||||||||    
T  20740588 ttggtggtgctgattttgg 20740570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 21881684 - 21881459
Alignment:
Q  1 tcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattg 100  Q
    ||||| |||||||||||||||||| | ||| |||||||||||  ||||||||||||| ||||| ||||||||||| ||||||||||| |||||||||| |    
T  21881684 tcggtcgttgtttggttttcgtggctctcagactatttgattcgttttctctcttggctgtggcggaggttatgtttgctcgcaacaaaggtggtgatgg 21881585  T
Q  101 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 200  Q
    |||||||| |||||||||||||| |||||||||||||||||||||||||  ||||||||||||| |||||||||| |||| ||||||||| ||||||||     
T  21881584 atcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgctatggtttcgatgaatctttggttatgttggtttgtggtgcttcatggc 21881485  T
Q  201 ggttttcttggtggtactgattttgg 226  Q
     ||| || ||||||| ||||||||||    
T  21881484 agttatcatggtggtgctgattttgg 21881459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 303 - 368
Target Start/End: Complemental strand, 20740518 - 20740453
Alignment:
Q  303 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 368  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  20740518 ctgatgttgcttttaggtgaaggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 20740453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 21881377 - 21881318
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||||    
T  21881377 tgttgctttttggtgagggttaatcgtgatttttgtggtggtcaatgctagttttggtga 21881318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 32747716 - 32747768
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  32747716 tttttggtgaggtgtaatggtggtttttgtggtggttaatggtagttttggtg 32747768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 167; Significance: 2e-89; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 4 - 226
Target Start/End: Complemental strand, 53202480 - 53202258
Alignment:
Q  4 gtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 103  Q
    ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||  ||||    
T  53202480 gtggttgtttggttttcgtgggtctcaaactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgacagatc 53202381  T
Q  104 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    ||||| |||||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||    
T  53202380 ggtcacgatggtggtgatgaatcatatctagattcgcttatgaacttatatggtttcgatggatctttggttgtattggtttgtggtacttcatgatggt 53202281  T
Q  204 tttcttggtggtactgattttgg 226  Q
    ||||||||||||  |||||||||    
T  53202280 tttcttggtggtgttgattttgg 53202258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 47518356 - 47518584
Alignment:
Q  1 tcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattg 100  Q
    |||||||||||||||||||| ||||| ||| |||||||||||| ||||||||||  ||||||||||||||||||| |||||||||||||||||||||| |    
T  47518356 tcggtggttgtttggttttcatgggtctcagactatttgatttgttttctctctatgttgtggtggaggttatgtttgctcgcaacataggtggtgatgg 47518455  T
Q  101 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 200  Q
    ||| ||||  ||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  47518456 atcagtcacaatggtggtgatgaatcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttcgtttgtggtacttcatggt 47518555  T
Q  201 ggttttcttggtggtactgattttggatc 229  Q
    ||||||||||||| | |||||||||||||    
T  47518556 ggttttcttggtgttgctgattttggatc 47518584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 4 - 226
Target Start/End: Original strand, 23054142 - 23054363
Alignment:
Q  4 gtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 103  Q
    ||||||||||||||||||||||| | | |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||    
T  23054142 gtggttgtttggttttcgtgggtctgagactatttgatttgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggatc 23054241  T
Q  104 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
     |||| |||||| ||| ||| |||||||| ||||||||||||||||  ||||||||| ||||||||||||||||||| ||| ||||| ||| |||| |||    
T  23054242 agtcacgatggt-gtgctggatcatatctcggttcgcttatgaactgttatggtttcaatggatctttggttgtgttggttcgtggtgctttatggcggt 23054340  T
Q  204 tttcttggtggtactgattttgg 226  Q
    |||| ||||||| ||||||||||    
T  23054341 tttcatggtggtgctgattttgg 23054363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 46 - 204
Target Start/End: Complemental strand, 6410164 - 6410005
Alignment:
Q  46 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 144  Q
    ||||||||||||| |||| |||||||||||| ||||||||| |||||||||||| ||||||||| || ||||| ||| | ||| ||||  ||||||||||    
T  6410164 tttctctcttggtggtggatggaggttatgtttgctcgcaaaataggtggtgatggatcggtcacgaaggtggcgatcgatcagatctgagttcgcttat 6410065  T
Q  145 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 204  Q
    || ||  ||||||||||||| ||||| ||||||||| ||||||||| |||||||||||||    
T  6410064 gatctattatggtttcgatgaatcttgggttgtgttggtttgtggtgcttcatggtggtt 6410005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 135 - 226
Target Start/End: Original strand, 34227057 - 34227148
Alignment:
Q  135 gttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    |||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||| |||||||||||| ||||||||||    
T  34227057 gttcgcttatgaacttatatggtttcaatggatctttggttgtgttggtctgtggtacttcatggtggctttcttggtggtgctgattttgg 34227148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 53202177 - 53202118
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53202177 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 53202118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 47518662 - 47518721
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  47518662 tgttgcttttaggtgagggttaatagtgatttttgtggtggtcaatggtagttttggtga 47518721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 303 - 371
Target Start/End: Original strand, 23054441 - 23054508
Alignment:
Q  303 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 371  Q
    ||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||| ||||    
T  23054441 ctgatgttgcttttaggtgagggttaatggtg-gttttgtggtggtcaatggtagttttggtgacgatg 23054508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 307 - 368
Target Start/End: Original strand, 34227204 - 34227265
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 368  Q
    |||||||||||||||||||||||||||| |||| ||| ||||||||||||||||| ||||||    
T  34227204 tgttgcttttaggtgagggttaatggtggttttcgtgatggtcaatggtagttttagtgatg 34227265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 156 - 221
Target Start/End: Original strand, 12469342 - 12469407
Alignment:
Q  156 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgat 221  Q
    ||||||||||||| ||||||||||| ||||||||| |||||||||||||  | ||||||| |||||    
T  12469342 gtttcgatggatccttggttgtgttggtttgtggtccttcatggtggttaccatggtggtgctgat 12469407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 45873154 - 45873102
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  45873154 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 45873102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Original strand, 12489216 - 12489259
Alignment:
Q  319 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  12489216 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 12489259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 62 - 108
Target Start/End: Original strand, 24957572 - 24957618
Alignment:
Q  62 ggtggaggttatgtctgctcgcaacataggtggtgattgatcggtca 108  Q
    |||||||||||||| ||||||||||||||||||||||  ||||||||    
T  24957572 ggtggaggttatgtttgctcgcaacataggtggtgatgtatcggtca 24957618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 156 - 204
Target Start/End: Original strand, 12466698 - 12466746
Alignment:
Q  156 gtttcgatggatctttggttgtgttagtttgtggtacttcatggtggtt 204  Q
    ||||||||||||| |||||| |||| ||||||||| |||||||||||||    
T  12466698 gtttcgatggatccttggttatgttggtttgtggtccttcatggtggtt 12466746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 14441167 - 14441115
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  14441167 tttttggtgaggattaatggtggtttttgtgctggttaatggtagttttggtg 14441115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 363
Target Start/End: Complemental strand, 12130566 - 12130516
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttgg 363  Q
    |||| ||||||| |||||| |  ||||||||||||||||||||||||||||    
T  12130566 tttttggtgaggattaatgatagtttttgtggtggtcaatggtagttttgg 12130516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 38093267 - 38093215
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| || |||||| ||||||||||||| | ||||||||||||||    
T  38093267 tttttggtgaggatttatggtgttttttgtggtggttattggtagttttggtg 38093215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 55728744 - 55728692
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| || ||||||||    
T  55728744 tttttggtgaggattaatggtggtttttgtggtggttaatgataattttggtg 55728692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 145; Significance: 3e-76; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 2 - 226
Target Start/End: Original strand, 7766911 - 7767135
Alignment:
Q  2 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 101  Q
    ||||||||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||||||||||||||    
T  7766911 cggtggttgtttggttttcgtgggtctcagactatttgatttgttttctctcttggttgtgatggaggttatgtttgctcgcaacataggtggtgattga 7767010  T
Q  102 tcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtg 201  Q
    |||| ||  ||||||||||||| |||||||||||||| |||||||| |  ||||||||||||||||||||||||||||| ||||||||| |||||||| |    
T  7767011 tcggccacaatggtggtgatggatcatatctaggttcacttatgaattgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcg 7767110  T
Q  202 gttttcttggtggtactgattttgg 226  Q
    | |||| |||||||  |||||||||    
T  7767111 ggtttcatggtggtgttgattttgg 7767135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 18697152 - 18696922
Alignment:
Q  1 tcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||||||||||||||||| ||| |||||||||||| |||| | | |||||||||  ||||||||||||| ||| ||||||||||||||||||    
T  18697152 tcggtggttgtttggttttcgtgggtctcagactatttgatttgttttttatattggttgtgtggtggaggttatgtttgcccgcaacataggtggtgat 18697053  T
Q  99 tgatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 198  Q
     |||| |||| |||||||||||||| |||||||||||||||||||||||||  ||||| |||| |||||||||||||||||| ||||||||| |||||||    
T  18697052 ggatcagtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatgggttcggtggatctttggttgtgttggtttgtggtgcttcatg 18696953  T
Q  199 gtggttttcttggtggtactgattttggatc 229  Q
    | | ||||| ||||| | |||||||||||||    
T  18696952 gcgtttttcatggtgttgctgattttggatc 18696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 27169997 - 27170219
Alignment:
Q  5 tggttgtttggttttcgtgggtatcaaactatttgatttctttt-ctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgatc 103  Q
    |||||||||||||||||||||| |||  ||||||||||  |||| ||||||||||||||||||||||||||| |||||||||| || |||||||| ||||    
T  27169997 tggttgtttggttttcgtgggtctcaggctatttgattcgtttttctctcttggttgtggtggaggttatgtttgctcgcaacgtaagtggtgatggatc 27170096  T
Q  104 ggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    ||||| ||||||||| |||| |||||| | | ||  |||| |||||  ||||||||||||||||||||||||||||| ||||||||| |||||||| |||    
T  27170097 ggtcacgatggtggtaatggatcatatttggctttacttacgaactgttatggtttcgatggatctttggttgtgttggtttgtggtgcttcatggcggt 27170196  T
Q  204 tttcttggtggtactgattttgg 226  Q
    |||| ||||||| || |||||||    
T  27170197 tttcatggtggtgctaattttgg 27170219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 116 - 203
Target Start/End: Original strand, 41355543 - 41355630
Alignment:
Q  116 ggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    |||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  41355543 ggtgatggatcatatctatgttcgctcatgaacttatatggtttcgatggatctttggttgtgttggtttgtggtacttcatggtggt 41355630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 38958379 - 38958442
Alignment:
Q  303 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38958379 ctgacgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 38958442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 41355722 - 41355777
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41355722 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 41355777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 7271960 - 7271894
Alignment:
Q  32 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  7271960 actatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgat 7271894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 2 - 103
Target Start/End: Original strand, 41355452 - 41355553
Alignment:
Q  2 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 101  Q
    |||||||||||| |||| ||||| | | |  ||||||||||| ||||||||||||||||||||||||||||| | ||||||||||||||| |||||| ||    
T  41355452 cggtggttgtttagtttccgtggatcttaggctatttgatttgttttctctcttggttgtggtggaggttatatttgctcgcaacataggcggtgatgga 41355551  T
Q  102 tc 103  Q
    ||    
T  41355552 tc 41355553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 155 - 226
Target Start/End: Original strand, 38958230 - 38958301
Alignment:
Q  155 ggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    |||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||| |||| ||||||||||    
T  38958230 ggtttcgatggatctttggttgtgttggtttgtgatacttcatggtggtttttttgatggtgctgattttgg 38958301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 160 - 226
Target Start/End: Complemental strand, 7271892 - 7271826
Alignment:
Q  160 cgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    ||||||||||||||||||||| ||||||||| |||||||| ||||||| ||||||| ||||||||||    
T  7271892 cgatggatctttggttgtgttggtttgtggtgcttcatggcggttttcatggtggtgctgattttgg 7271826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 6030388 - 6030461
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||  ||||||| ||||||| ||||||||||    
T  6030388 atggtttcgatggatctttggttgtgttggtttgtggtgcttcctgacggttttcatggtggtgctgattttgg 6030461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 7271767 - 7271708
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||  |||| ||||||||||| ||||||||||||||||||||| |||||||||    
T  7271767 tgttgctttttagtgatggttaatggtggtttttgtggtggtcaatggtacttttggtga 7271708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Original strand, 6030323 - 6030389
Alignment:
Q  32 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||  |||||||||||||||| |||||| ||||||| || ||| |||||||||||||||    
T  6030323 actatttgattcgttttctctcttggttgcggtggatgttatgtttgatcggaacataggtggtgat 6030389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 26656895 - 26656829
Alignment:
Q  32 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26656895 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26656829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 26928482 - 26928416
Alignment:
Q  32 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||  ||||||||||||||||| ||| ||||||||| ||||||||| ||| ||||||||    
T  26928482 actatttgattcgttttctctcttggttgttgtgaaggttatgtttgctcgcaatataagtggtgat 26928416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 307 - 361
Target Start/End: Original strand, 27170275 - 27170329
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 361  Q
    |||||||||| ||||||| ||||||||| ||||||||||||| ||||||||||||    
T  27170275 tgttgctttttggtgaggattaatggtggtttttgtggtggttaatggtagtttt 27170329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 26331217 - 26331269
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| ||||||||| ||||||||||||| ||||||||||||||||    
T  26331217 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttggtg 26331269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 26656688 - 26656630
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26656688 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26656630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 26928275 - 26928217
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||  |||| ||||||||||| |||| ||||||||||||||||||||||||||    
T  26928275 tgttgctttttagtgatggttaatggtggtttt-gtggtggtcaatggtagttttggtga 26928217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 40599985 - 40600040
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    ||||| |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  40599985 tgttgatttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 40600040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 365
Target Start/End: Complemental strand, 42221426 - 42221388
Alignment:
Q  327 taatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||||||||||||||||||||| ||||||||||||||||    
T  42221426 taatggtgatttttgtggtggttaatggtagttttggtg 42221388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 307 - 362
Target Start/End: Original strand, 7767203 - 7767255
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    |||||||||||||||||||||   |||| |||||||||||||||||| ||||||||    
T  7767203 tgttgcttttaggtgagggtt---ggtggtttttgtggtggtcaatgatagttttg 7767255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 24867205 - 24867257
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| ||||||||| |||||||| |||| ||||||||||||||||    
T  24867205 tttttggtgaggattaatggtggtttttgtgttggttaatggtagttttggtg 24867257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 26656830 - 26656780
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26656830 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26656780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 153 - 203
Target Start/End: Complemental strand, 26928417 - 26928367
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    |||||||||| |||||||||||||| || |||| |||| ||||||||||||    
T  26928417 atggtttcgacggatctttggttgtattggtttatggtgcttcatggtggt 26928367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 10409040 - 10408814
Alignment:
Q  3 ggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgat 102  Q
    ||||||| ||||||||| |||||| |||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||||||||||||| ||     
T  10409040 ggtggttatttggtttttgtgggtctcaaactatttgattttttctctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatggaa 10408941  T
Q  103 cggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtgg 202  Q
    |||||| |||||||||||||| ||||||||||||||||||||||  |  ||||||||||||| ||||||||||||||| ||||||||| |||||||| ||    
T  10408940 cggtcacgatggtggtgatggatcatatctaggttcgcttatgatatgttatggtttcgatgaatctttggttgtgttggtttgtggtgcttcatggagg 10408841  T
Q  203 ttttcttggtggtactgattttggatc 229  Q
    ||||  ||||||| || ||||||||||    
T  10408840 ttttaatggtggtgctaattttggatc 10408814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 5994846 - 5994622
Alignment:
Q  2 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattg 100  Q
    ||||| ||||||||||||||||||  ||||||| |||||||| ||||||||||||||||||| |||| ||||||| |||||||||||||| || | || |    
T  5994846 cggtgattgtttggttttcgtgggcctcaaactgtttgatttgttttctctcttggttgtggatggatgttatgtttgctcgcaacatag-tgctaatgg 5994748  T
Q  101 atcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggt 200  Q
    |||| |||||||||||||||||| |||||||| ||||||||||||||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||     
T  5994747 atcgatcatgatggtggtgatggatcatatctgggttcgcttatgaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggc 5994648  T
Q  201 ggttttcttggtggtactgattttgg 226  Q
    ||| ||| ||||| |  |||||||||    
T  5994647 ggtattcatggtgatgttgattttgg 5994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 46 - 226
Target Start/End: Complemental strand, 6444208 - 6444027
Alignment:
Q  46 tttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttcgcttat 144  Q
    |||||||||||||||||| |||||||||||| |||||||||| |||||||| || ||| |||||  | ||||||||||| ||| || |  |||||| |||    
T  6444208 tttctctcttggttgtggatggaggttatgtttgctcgcaacttaggtggttatggattggtcacaaaggtggtgatggatcagatatgagttcgcctat 6444109  T
Q  145 gaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    || ||  ||||||||||| | ||||||| ||||||| |||||||||||||| ||||||||||| ||||||  ||||||||||    
T  6444108 gagctgttatggtttcgaagaatctttgattgtgttggtttgtggtacttcgtggtggttttcatggtggggctgattttgg 6444027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 5994537 - 5994485
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5994537 tttttggtgagggttaatggtgatttttgtggtggttaatggtagttttggtg 5994485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 10408761 - 10408702
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||    
T  10408761 tgttgcttttaggtgagagttaatggtggtttttgtggtggtcaatggttgttttagtga 10408702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 15050162 - 15050214
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||| |||||| || ||||||||||||| ||||||||||||||||    
T  15050162 tttttggtgaggattaatgatggtttttgtggtggttaatggtagttttggtg 15050214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 318 - 362
Target Start/End: Original strand, 3763045 - 3763089
Alignment:
Q  318 ggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    ||||||| |||||| || ||||||||||||| |||||||||||||    
T  3763045 ggtgaggattaatgatggtttttgtggtggttaatggtagttttg 3763089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 25142954 - 25142902
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| |||||||  || ||||||||||||||||||| |||||||||| |||||    
T  25142954 ttttcggtgaggagtagtggtgatttttgtggtggttaatggtagttgtggtg 25142902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 112; Significance: 2e-56; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 3302790 - 3302567
Alignment:
Q  3 ggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattgat 102  Q
    |||||||||||||||||||||| | ||| |||||||||||  ||| ||||||||||||||||||||||||||| |||||||||||||||||||||| |||    
T  3302790 ggtggttgtttggttttcgtggatctcagactatttgattcatttcctctcttggttgtggtggaggttatgtttgctcgcaacataggtggtgatagat 3302691  T
Q  103 cggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtgg 202  Q
    || ||| ||||||||||||   |||||||||| ||||||||| ||||  ||| |||||||||||||||||||||| || || |||||| |||||||   |    
T  3302690 cgatcacgatggtggtgatacatcatatctagattcgcttattaactgttatagtttcgatggatctttggttgtattggtatgtggtgcttcatgacag 3302591  T
Q  203 ttttcttggtggtactgattttgg 226  Q
    ||||| |||||||  |||||||||    
T  3302590 ttttcatggtggtgttgattttgg 3302567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 366
Target Start/End: Original strand, 11698554 - 11698613
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11698554 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 11698613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 3302486 - 3302427
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    |||||||||| |||||| |||||||||| |||||||||||||||||||||||||||||||    
T  3302486 tgttgctttttggtgagtgttaatggtggtttttgtggtggtcaatggtagttttggtga 3302427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 31039052 - 31039000
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| |||||||  |||||||| ||||||||||||| ||||||||||||||||    
T  31039052 ttttcggtgaggagtaatggtggtttttgtggtggttaatggtagttttggtg 31039000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 2 - 199
Target Start/End: Complemental strand, 34118190 - 34117991
Alignment:
Q  2 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtg--gtggaggttatgtctgctcgcaacataggtggtgatt 99  Q
    |||||||||||| |||||||||| | ||| | |||||||||| |||||||| |||||||||  || |||||||||| ||||||||||||||||||||||     
T  34118190 cggtggttgtttagttttcgtggatctcagattatttgatttgttttctctattggttgtgtggtagaggttatgtttgctcgcaacataggtggtgatg 34118091  T
Q  100 gatcggtcatgatggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatgg 199  Q
    ||||||||| |||||||||||||| |||||||||||||||||||||||||  |||||||||  ||||||||||||||||||  |||||||| | ||||||    
T  34118090 gatcggtcacgatggtggtgatggatcatatctaggttcgcttatgaactgttatggtttcagtggatctttggttgtgttgatttgtggtgcctcatgg 34117991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 2 - 103
Target Start/End: Complemental strand, 34655171 - 34655070
Alignment:
Q  2 cggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattga 101  Q
    ||||| ||||||||||||||||||| ||| |||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||||| ||    
T  34655171 cggtgtttgtttggttttcgtgggtctcagactatttgatttgttttctcttttggttgtggtggaggttatgtttgctcgcaacataggtggtgatgga 34655072  T
Q  102 tc 103  Q
    ||    
T  34655071 tc 34655070  T

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Target: chr1; HSP #3
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 40 - 203
Target Start/End: Original strand, 11407928 - 11408092
Alignment:
Q  40 atttcttttctctcttggttgtgg-tggaggttatgtctgctcgcaacataggtggtgattgatcggtcatgatggtggtgatgggtcatatctaggttc 138  Q
    |||| |||||||||||||| |||| |||||||||||| ||||||||||||| |||||||| |||||| || || ||||||||||| ||| || | ||||     
T  11407928 atttgttttctctcttggtggtgggtggaggttatgtttgctcgcaacataagtggtgatggatcggccacgaaggtggtgatggatcagatatgggtta 11408027  T
Q  139 gcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    ||||||||  |  |||||||||||   ||||||||||||||| ||||||||| ||||||||||||    
T  11408028 gcttatgatatgttatggtttcgacaaatctttggttgtgttggtttgtggtgcttcatggtggt 11408092  T

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Target: chr1; HSP #4
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 113 - 229
Target Start/End: Complemental strand, 34655083 - 34654967
Alignment:
Q  113 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggt 212  Q
    ||||||||||| ||||||||||||||||||||||| |  |||||||| |||| ||||||| ||||||| ||||||||| |||||||| ||||||| ||||    
T  34655083 ggtggtgatggatcatatctaggttcgcttatgaaatgttatggttttgatgcatctttgattgtgttggtttgtggtgcttcatggcggttttcatggt 34654984  T
Q  213 ggtactgattttggatc 229  Q
    ||| |||||||||||||    
T  34654983 ggtgctgattttggatc 34654967  T

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Target: chr1; HSP #5
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 104
Target Start/End: Original strand, 39708927 - 39709029
Alignment:
Q  1 tcggtggttgtttggttttcgtgggtatcaaactatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgattg 100  Q
    |||||||||||||||||||| ||||| || ||||||||||||  ||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |    
T  39708927 tcggtggttgtttggttttc-tgggtctcgaactatttgattcgttttctctcttggttgtggtggaggttatgtttgctcgcaatataggtggtgatgg 39709025  T
Q  101 atcg 104  Q
    ||||    
T  39709026 atcg 39709029  T

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Target: chr1; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 34654889 - 34654830
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34654889 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 34654830  T

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Target: chr1; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 26236671 - 26236781
Alignment:
Q  115 tggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtgg 214  Q
    ||||||||| ||| |||| ||||| ||||||| ||  ||||| ||||||||||||||||||| ||| ||||||||| |||||||||||||||| || |||    
T  26236671 tggtgatggatcagatctgggttcacttatgacctgttatgggttcgatggatctttggttgcgttggtttgtggtgcttcatggtggttttcatgatgg 26236770  T
Q  215 tactgattttg 225  Q
    | |||||||||    
T  26236771 tgctgattttg 26236781  T

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Target: chr1; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 113 - 203
Target Start/End: Original strand, 39709015 - 39709105
Alignment:
Q  113 ggtggtgatgggtcatatctaggttcgcttatgaacttatatggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggt 203  Q
    ||||||||||| || ||||| |||||||||| |||||  |||||||| |||||||||||||||||||| ||||||||| ||||||||||||    
T  39709015 ggtggtgatggatcgtatctgggttcgcttaggaactgttatggttttgatggatctttggttgtgttggtttgtggtgcttcatggtggt 39709105  T

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Target: chr1; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 32 - 98
Target Start/End: Complemental strand, 615891 - 615825
Alignment:
Q  32 actatttgatttcttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||  |||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  615891 actatttgattcgttttctctcttggttgtggtggagattatgtttgatcgcaacataggtggtgat 615825  T

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Target: chr1; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 615826 - 615753
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    ||||||| |||||||||||||||||||||||||||||| |||||||  ||||||| ||||||| |||| |||||    
T  615826 atggttttgatggatctttggttgtgttagtttgtggtgcttcatgacggttttcatggtggtgctgaatttgg 615753  T

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Target: chr1; HSP #11
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 303 - 366
Target Start/End: Original strand, 39709180 - 39709243
Alignment:
Q  303 ctgatgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtga 366  Q
    ||||| || ||||| ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  39709180 ctgatatttctttttggtgagggttaatggtgatttttgtggtggttaatggtagttttcgtga 39709243  T

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Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 308 - 368
Target Start/End: Complemental strand, 34117955 - 34117896
Alignment:
Q  308 gttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatg 368  Q
    ||||||||| ||||||||||||||||| ||||||| | |||||||||||||||||||||||    
T  34117955 gttgctttt-ggtgagggttaatggtggtttttgtagcggtcaatggtagttttggtgatg 34117896  T

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Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 615691 - 615638
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttt 360  Q
    ||||||||||  |||| |||||||||||  |||||||| |||||||||||||||    
T  615691 tgttgctttttagtgatggttaatggtgccttttgtggcggtcaatggtagttt 615638  T

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Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 11814744 - 11814695
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    |||| ||||||| ||||||||| |||||||| |||| |||||||||||||    
T  11814744 tttttggtgaggattaatggtggtttttgtgatggttaatggtagttttg 11814695  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 361
Target Start/End: Original strand, 2077483 - 2077531
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagtttt 361  Q
    |||| ||||||| ||||||||| ||||||||||||| |||| |||||||    
T  2077483 tttttggtgaggattaatggtggtttttgtggtggttaatgatagtttt 2077531  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Original strand, 14351174 - 14351226
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| ||||||  ||||||||| ||||||||||||| | ||||||||||||||    
T  14351174 tttttggtgagaattaatggtggtttttgtggtggttagtggtagttttggtg 14351226  T

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Target: chr3 (Bit Score: 54; Significance: 6e-22; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 153 - 226
Target Start/End: Original strand, 18269763 - 18269836
Alignment:
Q  153 atggtttcgatggatctttggttgtgttagtttgtggtacttcatggtggttttcttggtggtactgattttgg 226  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||||||||| |||||||  |||||||||    
T  18269763 atggtttcgatggatctttggttgtgttggtttgtggtgcttcatggtggttttcatggtggtgttgattttgg 18269836  T

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Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 307 - 366
Target Start/End: Complemental strand, 43275890 - 43275830
Alignment:
Q  307 tgttgcttttaggtgagggttaatggtgattttt-gtggtggtcaatggtagttttggtga 366  Q
    |||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||    
T  43275890 tgttgctttttggtgagggttaatggtggttttttgtggtggtcaatggtagttttggtga 43275830  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 319 - 371
Target Start/End: Original strand, 18269919 - 18269971
Alignment:
Q  319 gtgagggttaatggtgatttttgtggtggtcaatggtagttttggtgatgatg 371  Q
    |||| ||||||||||| ||||||||||||||||||| ||||||||||| ||||    
T  18269919 gtgatggttaatggtggtttttgtggtggtcaatggaagttttggtgacgatg 18269971  T

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Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 18269711 - 18269764
Alignment:
Q  45 ttttctctcttggttgtggtggaggttatgtctgctcgcaacataggtggtgat 98  Q
    |||||||||||| || || ||||||||||||||| ||| |||||||||||||||    
T  18269711 ttttctctcttgattatgatggaggttatgtctgatcgaaacataggtggtgat 18269764  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 313 - 362
Target Start/End: Complemental strand, 31699270 - 31699221
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    |||| ||||||| ||||||||| ||||||||||||| |||||||||||||    
T  31699270 tttttggtgaggattaatggtggtttttgtggtggttaatggtagttttg 31699221  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 198
Target Start/End: Complemental strand, 43276045 - 43275999
Alignment:
Q  152 tatggtttcgatggatctttggttgtgttagtttgtggtacttcatg 198  Q
    |||| |||||||| ||||||||||||||| ||||||||| |||||||    
T  43276045 tatgatttcgatgaatctttggttgtgttggtttgtggtgcttcatg 43275999  T

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Target: scaffold0157 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0157
Description:

Target: scaffold0157; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 319 - 362
Target Start/End: Complemental strand, 31261 - 31218
Alignment:
Q  319 gtgagggttaatggtgatttttgtggtggtcaatggtagttttg 362  Q
    |||| ||||||||||||||||||||||||| |||||||||||||    
T  31261 gtgatggttaatggtgatttttgtggtggttaatggtagttttg 31218  T

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Target: scaffold0027 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 313 - 365
Target Start/End: Complemental strand, 2989 - 2938
Alignment:
Q  313 ttttaggtgagggttaatggtgatttttgtggtggtcaatggtagttttggtg 365  Q
    |||| |||||||  ||||||||||||| |||||||| ||||||||||||||||    
T  2989 tttttggtgaggagtaatggtgatttt-gtggtggttaatggtagttttggtg 2938  T

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