View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF13138_high_22 (Length: 347)

Name: NF13138_high_22
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF13138_high_22
NF13138_high_22
[»] chr8 (10 HSPs)
chr8 (39-332)||(42455777-42456069)
chr8 (116-192)||(32927834-32927910)
chr8 (116-185)||(26668494-26668563)
chr8 (119-183)||(11791810-11791874)
chr8 (120-182)||(5997360-5997422)
chr8 (128-197)||(35525366-35525435)
chr8 (99-199)||(13384714-13384814)
chr8 (116-164)||(18355925-18355973)
chr8 (116-192)||(35495202-35495278)
chr8 (119-187)||(37684350-37684418)
[»] chr4 (11 HSPs)
chr4 (97-192)||(35064986-35065081)
chr4 (116-182)||(25318989-25319055)
chr4 (119-177)||(26617709-26617767)
chr4 (120-182)||(33560648-33560710)
chr4 (97-187)||(46344904-46344993)
chr4 (119-192)||(2635108-2635181)
chr4 (129-199)||(32818430-32818500)
chr4 (117-175)||(22683806-22683864)
chr4 (116-162)||(42152978-42153024)
chr4 (125-182)||(8330066-8330123)
chr4 (159-187)||(39733709-39733737)
[»] chr5 (11 HSPs)
chr5 (116-192)||(34250418-34250494)
chr5 (97-182)||(10898645-10898730)
chr5 (120-187)||(5468719-5468786)
chr5 (119-182)||(42439695-42439758)
chr5 (157-199)||(9818717-9818759)
chr5 (97-199)||(18851142-18851244)
chr5 (119-192)||(11648027-11648100)
chr5 (98-163)||(39097188-39097253)
chr5 (119-195)||(4848205-4848281)
chr5 (117-185)||(6806313-6806381)
chr5 (155-187)||(13171833-13171865)
[»] chr1 (10 HSPs)
chr1 (116-200)||(47321965-47322049)
chr1 (116-199)||(28083948-28084031)
chr1 (121-179)||(646127-646185)
chr1 (116-187)||(24587851-24587922)
chr1 (97-161)||(47892486-47892550)
chr1 (130-181)||(31362279-31362330)
chr1 (116-179)||(49824831-49824894)
chr1 (119-192)||(6021749-6021822)
chr1 (116-144)||(15478116-15478144)
chr1 (115-167)||(37131875-37131927)
[»] chr7 (9 HSPs)
chr7 (119-192)||(5489913-5489986)
chr7 (119-192)||(45004965-45005038)
chr7 (119-170)||(12306922-12306973)
chr7 (116-199)||(28725112-28725195)
chr7 (118-163)||(17111819-17111864)
chr7 (116-167)||(12306676-12306727)
chr7 (115-185)||(41788259-41788327)
chr7 (119-192)||(41386882-41386955)
chr7 (97-161)||(48158814-48158878)
[»] chr6 (18 HSPs)
chr6 (120-185)||(35098532-35098597)
chr6 (116-192)||(5724697-5724773)
chr6 (119-187)||(25195436-25195504)
chr6 (119-182)||(6653754-6653817)
chr6 (116-199)||(26280547-26280630)
chr6 (116-199)||(765446-765529)
chr6 (116-199)||(4910850-4910933)
chr6 (117-192)||(6654157-6654232)
chr6 (130-192)||(2008569-2008631)
chr6 (125-182)||(2234291-2234348)
chr6 (116-187)||(1485218-1485290)
chr6 (99-158)||(2002566-2002625)
chr6 (96-187)||(7952781-7952872)
chr6 (99-192)||(2008405-2008498)
chr6 (122-163)||(18690620-18690661)
chr6 (116-144)||(31305965-31305993)
chr6 (116-192)||(34620828-34620904)
chr6 (116-192)||(34748265-34748341)
[»] scaffold0168 (1 HSPs)
scaffold0168 (116-192)||(31768-31844)
[»] chr3 (11 HSPs)
chr3 (116-187)||(1441453-1441524)
chr3 (114-199)||(41115422-41115507)
chr3 (99-187)||(25359646-25359733)
chr3 (119-179)||(54596763-54596823)
chr3 (117-192)||(7717388-7717462)
chr3 (96-179)||(7717453-7717536)
chr3 (116-186)||(32523414-32523484)
chr3 (116-168)||(3845203-3845255)
chr3 (119-194)||(33548188-33548264)
chr3 (119-187)||(35264483-35264551)
chr3 (119-199)||(40736597-40736677)
[»] chr2 (14 HSPs)
chr2 (124-192)||(680344-680412)
chr2 (131-199)||(31453340-31453408)
chr2 (116-192)||(42740919-42740995)
chr2 (119-170)||(7630361-7630412)
chr2 (98-161)||(15928532-15928595)
chr2 (116-182)||(36987189-36987255)
chr2 (116-192)||(2002762-2002838)
chr2 (119-198)||(33502909-33502989)
chr2 (116-184)||(37420272-37420340)
chr2 (97-182)||(42774910-42774997)
chr2 (99-163)||(43501068-43501132)
chr2 (116-187)||(10644546-10644616)
chr2 (128-187)||(32777924-32777983)
chr2 (119-184)||(1976940-1977005)


Alignment Details
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 39 - 332
Target Start/End: Original strand, 42455777 - 42456069
Alignment:
Q  39 ttttttgatgcacattacttacttttgcagcttttgacatgttttgttgcttttgagtaaaattgattatggagcaatagaattgattttgacatgtttg 138  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  42455777 ttttttgatgtacattacttacttttgcagcttttaacatgttttgttgcttttgagtaaaattgattatggagcagtagaattgattttgacatgtttg 42455876  T
Q  139 gttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttgccccatagattttgacatatgtcatagcttttctctttt 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||    
T  42455877 gttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttgccccatagattttgacatgt-tcatagcttttctctttt 42455975  T
Q  239 tgtgtgaacttcttaataaataaatcatcatgccccacatataaaaattattggatccgtcactgtacacttgtgaacatatctgtgctcctcc 332  Q
    |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42455976 tgtgtgaacttcttaataaataaatcatcatgcctcgcatataaaaattattggatccgtcactgtacacttgtgaacatatctgtgctcctcc 42456069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 32927834 - 32927910
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    ||||||||| | |||||||||||||||||||  ||||| ||||||| |||||| ||| |||||||||||||| ||||    
T  32927834 tagaattgactctgacatgtttggttgctttccagtagaattgattttgcctcaatagttgattctacttgaagcta 32927910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 116 - 185
Target Start/End: Original strand, 26668494 - 26668563
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 185  Q
    ||||||||||| | ||||||||| ||  | | |||||| |||||||||||||||||||||||||||||||    
T  26668494 tagaattgattctaacatgtttgattcttgtcgagtagaattgattctgcctccataattgattctactt 26668563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 183
Target Start/End: Complemental strand, 11791874 - 11791810
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctac 183  Q
    ||||||||||| ||||||||||||| ||||| ||  ||||| | ||||||||||| |||||||||    
T  11791874 aattgattttggcatgtttggttgcctttgaatataattgaatttgcctccataactgattctac 11791810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 5997422 - 5997360
Alignment:
Q  120 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    |||||||||||||||||||| || |||||||||  ||||||| |||||| | || ||||||||    
T  5997422 attgattttgacatgtttggatgtttttgagtaaaattgattttgcctctaaaagtgattcta 5997360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 35525366 - 35525435
Alignment:
Q  128 tgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatt 197  Q
    ||||||||||| ||| | | |||||| ||||||||| || ||| |||||||| ||||||| |||||||||    
T  35525366 tgacatgtttgattgttgtcgagtagaattgattctaccaccagaattgattgtacttgaagctataatt 35525435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 99 - 199
Target Start/End: Complemental strand, 13384814 - 13384714
Alignment:
Q  99 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataattt 198  Q
    |||||||| |||||   ||||||||||| ||||||||||||||| | | |||| | |||  ||||  ||||| ||||||||||| |||| |||| |||||    
T  13384814 aattgattttggaggtgtagaattgattctgacatgtttggttgttgtcgagtcgaatttgttctttctccaaaattgattctatttgaagctaaaattt 13384715  T
Q  199 g 199  Q
    |    
T  13384714 g 13384714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 164
Target Start/End: Complemental strand, 18355973 - 18355925
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctg 164  Q
    |||||||||||||||||||| || ||| ||| |||||| ||||||||||    
T  18355973 tagaattgattttgacatgtatgattgttttcgagtagaattgattctg 18355925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 35495202 - 35495278
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||||| ||| || |  | ||| ||| ||| |||||| | |||||||||||||||| ||||    
T  35495202 tagaattgattttgacatgttttgtttctctaaattagaattaattttgcctctagaattgattctacttgaagcta 35495278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 187
Target Start/End: Original strand, 37684350 - 37684418
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||  || ||||||||||| | | |||||| ||||||| || ||||| ||||||||||||||||    
T  37684350 aattgattccgaaatgtttggttgttgtggagtagaattgattttgtctccagaattgattctacttga 37684418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 97 - 192
Target Start/End: Original strand, 35064986 - 35065081
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    ||||||||||||||||   ||||||||||| |||||| |||||||||||| |||||| ||||||| |||||| |||||||||| ||||||| ||||    
T  35064986 aaaattgattatggaggtgtagaattgattatgacatttttggttgctttcgagtagaattgattttgcctcaataattgattttacttgaagcta 35065081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 182
Target Start/End: Original strand, 25318989 - 25319055
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    ||||||||||||||||||||||||||||| | |||||| ||||||| || ||||| |||||||||||    
T  25318989 tagaattgattttgacatgtttggttgctctcgagtagaattgattttgtctccagaattgattcta 25319055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 119 - 177
Target Start/End: Complemental strand, 26617767 - 26617709
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattga 177  Q
    ||||||||||||||||||||| ||||||| | ||| ||||||| |||||||||||||||    
T  26617767 aattgattttgacatgtttggatgcttttcaatagaattgattttgcctccataattga 26617709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 120 - 182
Target Start/End: Complemental strand, 33560710 - 33560648
Alignment:
Q  120 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    ||||||||||||||||||||||||| | |||||| ||||||| |||||| | |||||||||||    
T  33560710 attgattttgacatgtttggttgctctcgagtagaattgattttgcctctagaattgattcta 33560648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 46344993 - 46344904
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||||||||||   || |||| ||| |||||||||||||||||||  ||||  ||||||| ||||||||||||| |||||||||||    
T  46344993 aaaattgattatggaggtgtataattaattctgacatgtttggttgctttcaagtataattgattttgcctccataatt-attctacttga 46344904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 2635108 - 2635181
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||| |||||||| ||||| | ||||| |||||||| |||||||| | ||||| ||||    
T  2635108 aattgattttgacatgtttgattgcttttaagtagaactgattttgcctccagaattgattatgcttgaagcta 2635181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 199
Target Start/End: Complemental strand, 32818500 - 32818430
Alignment:
Q  129 gacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||| ||||||| |||| |||||| ||||||| |||||||| ||||||||||| |||| |||| ||||||    
T  32818500 gacatatttggtttctttcgagtagaattgattttgcctccagaattgattctatttgaagctagaatttg 32818430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 175
Target Start/End: Original strand, 22683806 - 22683864
Alignment:
Q  117 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataatt 175  Q
    |||||||||||||||||||| | ||| |||||||||  ||||||| |||||||| ||||    
T  22683806 agaattgattttgacatgttggtttgtttttgagtaaaattgattttgcctccagaatt 22683864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 162
Target Start/End: Complemental strand, 42153024 - 42152978
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattc 162  Q
    ||||||| ||||||||||||||| ||||| |||||||| ||||||||    
T  42153024 tagaatttattttgacatgtttgattgctcttgagtagaattgattc 42152978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 125 - 182
Target Start/End: Original strand, 8330066 - 8330123
Alignment:
Q  125 ttttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    |||| ||||||||||||||| |  ||||  |||||||||||||||||||| |||||||    
T  8330066 tttttacatgtttggttgctctcaagtaaaattgattctgcctccataatggattcta 8330123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 187
Target Start/End: Complemental strand, 39733737 - 39733709
Alignment:
Q  159 attctgcctccataattgattctacttga 187  Q
    |||||||||||||||||||||||||||||    
T  39733737 attctgcctccataattgattctacttga 39733709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 34250494 - 34250418
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||| ||||||||||||||||| || | |||||| ||||||| |||||| | |||||||||||||||||||||    
T  34250494 tagaattgtttttgacatgtttggtttctctagagtagaattgattatgcctctagaattgattctacttgatgcta 34250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 97 - 182
Target Start/End: Original strand, 10898645 - 10898730
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    |||||||||| | ||||  | ||||| ||||||||||||||||||||| | |||||  ||||||| |||||| | |||||||||||    
T  10898645 aaaattgattctagagctgtcgaattaattttgacatgtttggttgctctcgagtaaaattgattttgcctctagaattgattcta 10898730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 187
Target Start/End: Original strand, 5468719 - 5468786
Alignment:
Q  120 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||| ||||||||||| ||| | | || ||  |||||||||||||||||| ||||||||||||||    
T  5468719 attgattatgacatgtttgattgttgtcgattataattgattctgcctccatatttgattctacttga 5468786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 182
Target Start/End: Complemental strand, 42439758 - 42439695
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    ||||||||||||||  ||||||||||| ||| ||| ||||||| | |||||| |||||||||||    
T  42439758 aattgattttgacacatttggttgcttgtgactagaattgatttttcctccagaattgattcta 42439695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 157 - 199
Target Start/End: Original strand, 9818717 - 9818759
Alignment:
Q  157 tgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||| ||||||||||||||||||||||||| ||||| |||||    
T  9818717 tgattttgcctccataattgattctacttgaagctatgatttg 9818759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 18851244 - 18851142
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataat 196  Q
    ||||||||||||||||   ||||||||| | |||| |||||||||||| |  | ||| |||||| ||  | | |||||||||||||||||| ||||| ||    
T  18851244 aaaattgattatggagttgtagaattgactctgacgtgtttggttgctatcaattagaattgatcctatccctataattgattctacttgaagctatgat 18851145  T
Q  197 ttg 199  Q
    |||    
T  18851144 ttg 18851142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 11648027 - 11648100
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||| ||||| | |||||| ||| ||| ||| |  | |||||||||||||||| ||||    
T  11648027 aattgattttgacatgtttgattgctgtcgagtagaatttattatgcatttaaaattgattctacttgaagcta 11648100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 39097188 - 39097253
Alignment:
Q  98 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattct 163  Q
    ||||||||||| |||   ||||||||||||||||||||||||||| |||   |||| |||||||||    
T  39097188 aaattgattatagaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattct 39097253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 195
Target Start/End: Complemental strand, 4848281 - 4848205
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataa 195  Q
    |||||||| |||||||||||  | || | |||||| ||||||| ||  ||||||||||||||||||| | |||||||    
T  4848281 aattgattctgacatgtttgactactctcgagtagaattgattttggttccataattgattctacttaaagctataa 4848205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 185
Target Start/End: Original strand, 6806313 - 6806381
Alignment:
Q  117 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 185  Q
    |||||||||| ||||||||||||||  | ||||||   |||||||||||||  | ||||||||||||||    
T  6806313 agaattgattctgacatgtttggttattcttgagtgaaattgattctgcctttagaattgattctactt 6806381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 155 - 187
Target Start/End: Complemental strand, 13171865 - 13171833
Alignment:
Q  155 attgattctgcctccataattgattctacttga 187  Q
    |||||||||||||||| ||||||||||||||||    
T  13171865 attgattctgcctccaaaattgattctacttga 13171833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 116 - 200
Target Start/End: Complemental strand, 47322049 - 47321965
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttgc 200  Q
    |||||||||||||||||||||| |||| | | |||||| ||||||||||| || |||||||||| ||||||| |||| |||||||    
T  47322049 tagaattgattttgacatgttttgttgttgtcgagtagaattgattctgcttctataattgattatacttgaagctagaatttgc 47321965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 28084031 - 28083948
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||||||||| |||||| |||||||| ||| |||||| ||||||| || || | ||||||||||||||||| |||| ||||||    
T  28084031 tagaattgattctgacatatttggttgttttcgagtagaattgattttgtcttcgtaattgattctacttgaagctagaatttg 28083948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 121 - 179
Target Start/End: Original strand, 646127 - 646185
Alignment:
Q  121 ttgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 179  Q
    |||||| ||||||||||||||| |||||||||| ||||||| |||||||| ||||||||    
T  646127 ttgattatgacatgtttggttgtttttgagtagaattgattttgcctccagaattgatt 646185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 24587851 - 24587922
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||||| ||||||||||||||||| |||||||| ||||| | || | ||| || |||||||||||||    
T  24587851 tagaattgattgtgacatgtttggttgctcttgagtagaattgactttgacgccagaactgattctacttga 24587922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 47892550 - 47892486
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 161  Q
    |||||||||||||||    |||||||||||  | ||||||||||||||||||||||| |||||||    
T  47892550 aaaattgattatggaagtgtagaattgattccgtcatgtttggttgcttttgagtagaattgatt 47892486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 130 - 181
Target Start/End: Complemental strand, 31362330 - 31362279
Alignment:
Q  130 acatgtttggttgcttttgagtaggattgattctgcctccataattgattct 181  Q
    |||||||||||||||||   |||| ||||||| |||||||||||||||||||    
T  31362330 acatgtttggttgctttcatgtagaattgattttgcctccataattgattct 31362279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 179
Target Start/End: Original strand, 49824831 - 49824894
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 179  Q
    |||||||||||||||||| |||| ||||||| |||||  ||||||| || ||||| ||||||||    
T  49824831 tagaattgattttgacatctttgtttgctttcgagtacaattgattttggctccaaaattgatt 49824894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 6021749 - 6021822
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||| ||||| ||| |||  ||||| ||||||| |||||| | ||| |||||||||||| ||||    
T  6021749 aattgattttgacaagtttgattgatttcaagtagaattgattttgcctctagaatcgattctacttgaagcta 6021822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 15478144 - 15478116
Alignment:
Q  116 tagaattgattttgacatgtttggttgct 144  Q
    |||||||||||||||||||||||||||||    
T  15478144 tagaattgattttgacatgtttggttgct 15478116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 115 - 167
Target Start/End: Original strand, 37131875 - 37131927
Alignment:
Q  115 atagaattgattttgacatgtttggttgcttttgagtaggattgattctgcct 167  Q
    ||||||||||||||| |||||||||||||| | ||||||  |||||| |||||    
T  37131875 atagaattgattttggcatgtttggttgctctcgagtagatttgattttgcct 37131927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 5489986 - 5489913
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||| | |||||||||||||||  ||||||| ||| ||| |||||||| |||||||||||||||||||||    
T  5489986 aattgattcttacatgtttggttgctcctgagtagaattaattttgcctccaaaattgattctacttgatgcta 5489913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 45004965 - 45005038
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||||||||| | || ||| ||||||| ||||| || |||||||||||||||| ||||    
T  45004965 aattgattttgacatgtttggttgctctcgaatagaattgattttgccttcagaattgattctacttgaagcta 45005038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 12306922 - 12306973
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctcca 170  Q
    |||||||||||||||||||||||||| |||||||| ||||||| ||||||||    
T  12306922 aattgattttgacatgtttggttgctcttgagtagaattgattttgcctcca 12306973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 28725195 - 28725112
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    |||||||||||| |||||||||||||| ||| |  ||| |||||||| |||||||  ||||||| ||||||| |||| ||||||    
T  28725195 tagaattgatttagacatgtttggttgttttcgtttagaattgattcagcctccaatattgattatacttgaagctagaatttg 28725112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 17111819 - 17111864
Alignment:
Q  118 gaattgattttgacatgtttggttgcttttgagtaggattgattct 163  Q
    ||||||||| ||||||||||||||||||| |||||| |||||||||    
T  17111819 gaattgattctgacatgtttggttgctttcgagtagaattgattct 17111864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 167
Target Start/End: Original strand, 12306676 - 12306727
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcct 167  Q
    ||||||||||||||||||||||||||||| |  ||||| ||||||| |||||    
T  12306676 tagaattgattttgacatgtttggttgctctcaagtagaattgattttgcct 12306727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 115 - 185
Target Start/End: Original strand, 41788259 - 41788327
Alignment:
Q  115 atagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 185  Q
    ||||||||||||||| |||||||||||||| |||||||| | ||||  || ||| | ||||||||||||||    
T  41788259 atagaattgattttggcatgtttggttgctcttgagtagaaatgat--tgtctcaagaattgattctactt 41788327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Complemental strand, 41386955 - 41386882
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||| ||||||||||| ||||||| |||||  |||||||   ||| || |||||||||||||||| ||||    
T  41386955 aattgattctgacatgtttgattgctttcgagtataattgatttcaccttcagaattgattctacttgaagcta 41386882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 48158814 - 48158878
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 161  Q
    ||||||||||||| ||   || |||||||||||||||||||||||||| | |||||  |||||||    
T  48158814 aaaattgattatgaaggcgtaaaattgattttgacatgtttggttgctctcgagtaaaattgatt 48158878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 120 - 185
Target Start/End: Complemental strand, 35098597 - 35098532
Alignment:
Q  120 attgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctactt 185  Q
    |||||||||||||||||||||| ||||||||||| ||||||| ||| ||||  |||||||||||||    
T  35098597 attgattttgacatgtttggttacttttgagtagaattgattttgcttccaggattgattctactt 35098532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 5724773 - 5724697
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    ||||||||||| |||||||||||| ||||||   |||| ||||||| |||||||| |||||||||||||||| ||||    
T  5724773 tagaattgattctgacatgtttggatgctttcaggtagaattgattttgcctccaaaattgattctacttgaagcta 5724697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 25195504 - 25195436
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    |||||||| ||||||||||||||||| | |||||  |||||||||||||||  ||||||||||||||||    
T  25195504 aattgattctgacatgtttggttgctatcgagtataattgattctgcctccggaattgattctacttga 25195436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 119 - 182
Target Start/End: Original strand, 6653754 - 6653817
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    ||||||||||||| |||||||||||| |  ||||| |||||||||||||| |||||||||||||    
T  6653754 aattgattttgacttgtttggttgctgtcaagtagaattgattctgcctctataattgattcta 6653817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 26280547 - 26280630
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||||||||||||||||||||| ||| ||||  |||| ||||||| |||||| | ||||||||| |||||| |||| ||||||    
T  26280547 tagaattgattttgacatgtttgattgttttttggtagaattgattttgcctcaagaattgattccacttgaagctagaatttg 26280630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 199
Target Start/End: Complemental strand, 765529 - 765446
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||||||||| |||| ||||||||||||||| ||||| | || || || ||| | |||||||||||||||| ||||| |||||    
T  765529 tagaattgattctgacgtgtttggttgcttttaagtagaactggttttggctcaagaattgattctacttgaagctatgatttg 765446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 199
Target Start/End: Original strand, 4910850 - 4910933
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||||||||| |||||||||||||||   |  | ||| |||||||||||||| | |||||||||||||||| ||||| |||||    
T  4910850 tagaattgattctgacatgtttggttgtcgtcaattagaattgattctgcctcaaaaattgattctacttgaagctatgatttg 4910933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 6654232 - 6654157
Alignment:
Q  117 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||| || |||||||||||||| |||||||| ||||||| | ||| || |||| ||||||||||| ||||    
T  6654232 agaattgattatgtcatgtttggttgctattgagtagaattgatttttccttcagaattaattctacttgaagcta 6654157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 192
Target Start/End: Complemental strand, 2008631 - 2008569
Alignment:
Q  130 acatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||  ||||| ||||||| |||||||| |||| ||||||| ||||||||    
T  2008631 acatgtttggttgctttctagtagaattgattttgcctccagaattaattctacgtgatgcta 2008569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 125 - 182
Target Start/End: Complemental strand, 2234348 - 2234291
Alignment:
Q  125 ttttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    |||||| ||||||||||||| |||||||| ||||||| |||||||  |||||||||||    
T  2234348 ttttgatatgtttggttgctcttgagtagaattgattttgcctcctgaattgattcta 2234291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 1485290 - 1485218
Alignment:
Q  116 tagaattgatt-ttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||||| |||||||||||| ||||| |||||||| ||| ||| |||||  | ||||||||||||||||    
T  1485290 tagaattgattcttgacatgtttgtttgctcttgagtagaattaattttgcctttagaattgattctacttga 1485218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 158
Target Start/End: Complemental strand, 2002625 - 2002566
Alignment:
Q  99 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattg 158  Q
    |||||||| |||||   ||||||||||||||||||||||||||| ||| |||||| ||||    
T  2002625 aattgattttggaggcgtagaattgattttgacatgtttggttgttttcgagtagaattg 2002566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 187
Target Start/End: Complemental strand, 7952872 - 7952781
Alignment:
Q  96 taaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||| |||||||||   || |||||||| ||||||||||| ||| |||||||| |  || ||| |||||||| |||| |||||||||||    
T  7952872 taaaattaattatggaggtgtaaaattgattatgacatgtttgattggttttgagttgatttaattttgcctccaaaatttattctacttga 7952781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 99 - 192
Target Start/End: Complemental strand, 2008498 - 2008405
Alignment:
Q  99 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||| |||||   |||||||| || ||||||||||| ||| ||| |||||| ||| ||| || |||||||||  ||||||||||| ||||    
T  2008498 aattgattttggaggtgtagaattgtttctgacatgtttgattgttttcgagtagaattcattttgtctccataatcaattctacttgaagcta 2008405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 163
Target Start/End: Original strand, 18690620 - 18690661
Alignment:
Q  122 tgattttgacatgtttggttgcttttgagtaggattgattct 163  Q
    |||||||||||||||||||||||||  ||||| |||||||||    
T  18690620 tgattttgacatgtttggttgctttcaagtagaattgattct 18690661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 31305993 - 31305965
Alignment:
Q  116 tagaattgattttgacatgtttggttgct 144  Q
    |||||||||||||||||||||||||||||    
T  31305993 tagaattgattttgacatgtttggttgct 31305965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 34620828 - 34620904
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||||||||| || |  | ||| ||| ||| |||||||  |||||||||||| ||| ||||    
T  34620828 tagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagcta 34620904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 34748265 - 34748341
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||||||||| || |  | ||| ||| ||| |||||||  |||||||||||| ||| ||||    
T  34748265 tagaattgattttgacatgtttggttcctataaactagaattaattttgcctccggaattgattctacatgaagcta 34748341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 31768 - 31844
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    ||||||||||| ||||||||||||||| | | |||||  |||||||||||||||| |||||||| ||||||| ||||    
T  31768 tagaattgattctgacatgtttggttgttgtcgagtaaaattgattctgcctccaaaattgattatacttgaagcta 31844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 116 - 187
Target Start/End: Complemental strand, 1441524 - 1441453
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||| |||||||||||||||| ||||||||||| ||||||| || ||| ||||| || |||||||||    
T  1441524 tagaattgagtttgacatgtttggtttcttttgagtagaattgattttgtctctataatcgactctacttga 1441453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 199
Target Start/End: Complemental strand, 41115507 - 41115422
Alignment:
Q  114 aatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||||| |||||||||||||||||| || |||  ||||| ||||||| ||| |  | |||||||||||||||| |||| ||||||    
T  41115507 aatagaactgattttgacatgtttggatgttttaaagtagaattgattttgcttgtagaattgattctacttgaagctagaatttg 41115422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 187
Target Start/End: Complemental strand, 25359733 - 25359646
Alignment:
Q  99 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||||||||  ||||||||| || |  |||||||||||||| |  | ||  |||||||||||||||| ||||||||||||||||    
T  25359733 aattgattatggaggtatagaattgcttctaccatgtttggttgctgtcaaataa-attgattctgcctccagaattgattctacttga 25359646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Original strand, 54596763 - 54596823
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 179  Q
    |||||||| ||||||||||||||| |||  ||||| |||||||||||||||| || |||||    
T  54596763 aattgattatgacatgtttggttgttttcaagtagaattgattctgcctccaaaaatgatt 54596823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 192
Target Start/End: Complemental strand, 7717462 - 7717388
Alignment:
Q  117 agaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||| |||| |    |||||| ||||||| |||||||| |||||||||||||||| ||||    
T  7717462 agaattgattttgacatgtt-ggttccgccagagtagaattgattttgcctccagaattgattctacttgaagcta 7717388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 96 - 179
Target Start/End: Complemental strand, 7717536 - 7717453
Alignment:
Q  96 taaaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgatt 179  Q
    ||||||||||| | |||   |||| ||||||||||||||||||||| ||   |||||| ||||||| |||||||| ||||||||    
T  7717536 taaaattgattgtagaggtttagagttgattttgacatgtttggttcctccagagtagaattgattttgcctccagaattgatt 7717453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 116 - 186
Target Start/End: Complemental strand, 32523484 - 32523414
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttg 186  Q
    |||||||||||  ||| |||||||||||||| |||||  || |||| |||||||||||||  |||||||||    
T  32523484 tagaattgattcagacttgtttggttgctttcgagtaaaatagattttgcctccataattatttctacttg 32523414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 168
Target Start/End: Complemental strand, 3845255 - 3845203
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctc 168  Q
    ||||||||||||||||||||||| ||| | |  ||||| ||||||||||||||    
T  3845255 tagaattgattttgacatgtttgtttgatctcaagtagaattgattctgcctc 3845203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 194
Target Start/End: Original strand, 33548188 - 33548264
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctata 194  Q
    ||||||||||||||||||||| |||| || ||||| ||||||| | ||| || ||| |||||| |||||| ||||||    
T  33548188 aattgattttgacatgtttggatgctattaagtagaattgatttttccttcaaaatggattctaacttgaagctata 33548264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 187
Target Start/End: Complemental strand, 35264551 - 35264483
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    |||||||| | ||||||||||||||| | ||  || |||||||||||||||| |  |||||||||||||    
T  35264551 aattgattctcacatgtttggttgctctcgaagagaattgattctgcctccaaatatgattctacttga 35264483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 119 - 199
Target Start/End: Complemental strand, 40736677 - 40736597
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    ||||||||||||| |||||| ||| | | |||||  ||||||| ||| |||  ||||||||||||||||  ||||||||||    
T  40736677 aattgattttgacgtgtttgattgttgtcgagtaaaattgattttgcatccgaaattgattctacttgaaactataatttg 40736597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.000000000008; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 680412 - 680344
Alignment:
Q  124 attttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||| |||||||| || ||| | ||||| |||||||| |||||||||||||||| ||||    
T  680412 attttgacatgtttagttgctttcgaatagaactgattttgcctccagaattgattctacttgaagcta 680344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 131 - 199
Target Start/End: Original strand, 31453340 - 31453408
Alignment:
Q  131 catgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgctataatttg 199  Q
    |||||||||||| | |||||||| ||| ||| |||||| |||||||||||||||||| |||| ||||||    
T  31453340 catgtttggttgatgttgagtagaatttattttgcctctataattgattctacttgaagctaaaatttg 31453408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 116 - 192
Target Start/End: Original strand, 42740919 - 42740995
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||||||||||||||  || ||||| || ||||| ||| | | ||||||||||||||||||||||| ||||    
T  42740919 tagaattgattttgacatgttccgtagctttcgaataggactgaattttcctccataattgattctacttgaagcta 42740995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 170
Target Start/End: Original strand, 7630361 - 7630412
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctcca 170  Q
    ||||||||||||||||||||||||||||  ||||| ||||||| ||||||||    
T  7630361 aattgattttgacatgtttggttgctttcaagtagaattgattttgcctcca 7630412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 15928595 - 15928532
Alignment:
Q  98 aaattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgatt 161  Q
    ||||||||| |||||   ||||||||||||||||||||||||||| | |||||||| |||||||    
T  15928595 aaattgattctggaggtgtagaattgattttgacatgtttggttgttgttgagtagaattgatt 15928532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 182
Target Start/End: Complemental strand, 36987255 - 36987189
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattcta 182  Q
    |||||||||||||||||||||||| | ||||||||||  ||||||| ||| |||| || ||||||||    
T  36987255 tagaattgattttgacatgtttggattcttttgagtataattgattttgcttccagaaatgattcta 36987189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 2002838 - 2002762
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttgatgcta 192  Q
    |||||||||| |||||||  |||||||||||  ||||| ||||||| |||||||| |  ||||||||||||| ||||    
T  2002838 tagaattgatgttgacatacttggttgctttctagtagaattgattttgcctccagacctgattctacttgaagcta 2002762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 198
Target Start/End: Complemental strand, 33502989 - 33502909
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattct-acttgatgctataattt 198  Q
    |||||||||||||||||||||||||| | |||||  | ||||| ||| |||| |||||||||| |||||| |||| |||||    
T  33502989 aattgattttgacatgtttggttgctctcgagtaaaactgattttgcatccagaattgattctaacttgaagctagaattt 33502909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 184
Target Start/End: Complemental strand, 37420340 - 37420272
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctact 184  Q
    |||||||||||||||||||||||| | |  | |||||| ||||||| |||||| | |||||||||||||    
T  37420340 tagaattgattttgacatgtttggcttccctagagtagaattgattttgcctctagaattgattctact 37420272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 97 - 182
Target Start/End: Complemental strand, 42774997 - 42774910
Alignment:
Q  97 aaaattgattatggagcaatagaattgattttgacatgtttggttg--cttttgagtaggattgattctgcctccataattgattcta 182  Q
    |||||||||| | |||  ||||||||||||||||||||||  ||||  || |||||||  ||||||||||||| || |||||||||||    
T  42774997 aaaattgattctagaggtatagaattgattttgacatgttccgttgctctcttgagtataattgattctgccttcaaaattgattcta 42774910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 99 - 163
Target Start/End: Original strand, 43501068 - 43501132
Alignment:
Q  99 aattgattatggagcaatagaattgattttgacatgtttggttgcttttgagtaggattgattct 163  Q
    |||||||  ||||||  ||||||||||| |||||||||||||||||||  ||||| |||||||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattct 43501132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 10644546 - 10644616
Alignment:
Q  116 tagaattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||| | |||||||||||  || ||| |||||| |||||||||||||||| |||| |||||||||||    
T  10644546 tagaattgactctgacatgtttgtctg-tttcgagtagaattgattctgcctccaaaatttattctacttga 10644616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 128 - 187
Target Start/End: Original strand, 32777924 - 32777983
Alignment:
Q  128 tgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctacttga 187  Q
    ||||||||||||||| ||| | |||| ||||||| ||||||||||||| |||| ||||||    
T  32777924 tgacatgtttggttgttttcgtgtagaattgattttgcctccataatttattcaacttga 32777983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 184
Target Start/End: Complemental strand, 1977005 - 1976940
Alignment:
Q  119 aattgattttgacatgtttggttgcttttgagtaggattgattctgcctccataattgattctact 184  Q
    |||||||||||||||||||| || |||   ||||| ||||||| || ||||| |||||||||||||    
T  1977005 aattgattttgacatgtttgctttcttaaaagtagaattgattttgtctccaaaattgattctact 1976940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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