View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_23 (Length: 344)
Name: NF13138_high_23
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_23 |
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Alignment Details
Target: chr7 (Bit Score: 173; Significance: 6e-93; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 173; E-Value: 6e-93
Query Start/End: Original strand, 80 - 328
Target Start/End: Complemental strand, 9243368 - 9243120
Alignment:
| Q |
80 |
atgtagtcgtggagtgtatcaagatcaaggtttagagtggtcgaagtatcatcttgattatgctcccataagcaagtatttcaaatgtgttatatgatcc |
179 |
Q |
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| T |
9243368 |
atgtagtcgcggagtgtatcaagatcaaggtttagagtggtcgaagtatcatcttgattctgctcccataagtaagtatttcggatgtgttatatgttcc |
9243269 |
T |
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| Q |
180 |
aaaggatatatgagaagcaagttgtagtattatcatccaaacttgcaagaacggaaaatatagttgtagcaaaatttccattactttgaatatggtatca |
279 |
Q |
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| T |
9243268 |
aaaggatagattagaagcaagctctagtgttatcatccaaacttgcatgagcggaaaatatagttgtagaaaaacttcgattactttgaatatggtatca |
9243169 |
T |
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| Q |
280 |
attctattccataaatttgcctctttccaacaattagtagcgtaagcac |
328 |
Q |
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| T |
9243168 |
attctactccataaatttgtctctttccaacaattagtagcataagcac |
9243120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 9243460 - 9243395
Alignment:
| Q |
12 |
atcaacattacatttcaactagttcgtactaggctttttccaagctagaattggcggtgctttgcaag |
79 |
Q |
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| T |
9243460 |
atcaacattacatttcaactagtt--tactaggctttttccaagttagaattggcggtgctttgcaag |
9243395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 79
Target Start/End: Complemental strand, 3879861 - 3879794
Alignment:
| Q |
12 |
atcaacattacatttcaactagttcgtactaggctttttccaagctagaattggcggtgctttgcaag |
79 |
Q |
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| T |
3879861 |
atcaacattacattttaacaagttaatactaggcttcttccaagctagagtggccggtgctttgcaag |
3879794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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