View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_25 (Length: 318)
Name: NF13138_high_25
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 300
Target Start/End: Complemental strand, 48887406 - 48887121
Alignment:
| Q |
16 |
atcaccaacagtggaacctgaatcccaccttcaaatgcaaagtgttttaaacattaaaaaagggatcaggtggtaaaaaa-gagagaggatggaagcaca |
114 |
Q |
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| T |
48887406 |
atcaccaacagtggaacctgaatcccaccttcaaatgcaaaatgttttaaacattaaaaaagggatcaggtggtaaaaaaagagagaggatggaagcaca |
48887307 |
T |
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| Q |
115 |
ttcacccatgcatgcaattagtcaattcttccaagtaaagaggaattaatctgacaatatggtaatttaaattcaagccttactgcaaaaaatatattta |
214 |
Q |
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| T |
48887306 |
ttcacccatgcatgcaattagtcaattcttccaagtaaagaggaattaatctgacaatatggtaatttaaattcaagccttactgcaaaaaatatattta |
48887207 |
T |
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| Q |
215 |
aaatactcaaacaagttaggaaatcaaatggttacattacatccatctaaatcatacagggtagacggagacatgataactgatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
48887206 |
aaatactcaaacaagttaggaaatcaaatggttacattacatccatctaaatcatacagggtagacggagacatgatagctgatgt |
48887121 |
T |
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