View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF13138_high_31 (Length: 265)
Name: NF13138_high_31
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_31 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 23 - 265
Target Start/End: Complemental strand, 22418591 - 22418349
Alignment:
| Q |
23 |
gcttgccttagctactctcctcccgatctctccgaatcaaatccaacaacattcaaaccttcgaaatgcggaagctcttagacggccataatggctattt |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
22418591 |
gcttgccttagctactctcctcccgatctctccgaatcaaatccaacaacattcaaaccttcgaaatgtggaagctcttagacggccataatggctattt |
22418492 |
T |
|
| Q |
123 |
gggttgatcatacagagcagactattcaaccgtcgggaagtcaacgggagggtgtttgtgaatcctgattataattagtccatggagcaacagagggaga |
222 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
22418491 |
gggttgatgatacagagcagactattcaaccgtcgggatgtcaacgggagggtgtttgtgaatcctgattataatcagtccatggagcaacagagggaga |
22418392 |
T |
|
| Q |
223 |
tgaccatgaaacgaattgcgtatttgttggatcgtggtgtgtt |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22418391 |
tgaccatgaaacgaattgcgtatttgttggatcgtggtgtgtt |
22418349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 141; Significance: 5e-74; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 22 - 262
Target Start/End: Complemental strand, 30622342 - 30622085
Alignment:
| Q |
22 |
tgcttgccttagctactctcctcccgatctctccgaatcaaatccaacaacattcaa-accttcgaaatgcggaagctcttagacggccataat------ |
114 |
Q |
| |
|
||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| | |||||||| |||||||||||||||||||| || ||| |
|
|
| T |
30622342 |
tgcttgccttagccactctcctcccgaactctccgaatcaaatccaacaacattcgacaccttcgagatgcggaagctcttagacggtcacaatttggaa |
30622243 |
T |
|
| Q |
115 |
----------ggctatttgggttgatcatacagagcagactattcaaccgtcgggaagtcaacgggagggtgtttgtgaatcctgattataattagtcca |
204 |
Q |
| |
|
||||||| |||||||| ||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
30622242 |
gatcgcgactggctattcgggttgatgatacagagcggactattcaaccggcgggaagtcgacgggagggtgtttgtgaatcctgattataaccagtcca |
30622143 |
T |
|
| Q |
205 |
tggagcaacagagggagatgaccatgaaacgaattgcgtatttgttggatcgtggtgt |
262 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30622142 |
tggagcaacagagggaaatgaccatgaaacgaattgcgtatttgttggatcgtggtgt |
30622085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University