View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_33 (Length: 249)
Name: NF13138_high_33
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_33 |
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Alignment Details
Target: chr4 (Bit Score: 174; Significance: 1e-93; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 1 - 239
Target Start/End: Original strand, 47627301 - 47627537
Alignment:
| Q |
1 |
catgatcacacacaaaatatagagaagatgagtattgcaagttcaaacttgtctcatgcaatatttttatcatcagttgtatttacaggnnnnnnnnnnn |
100 |
Q |
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| T |
47627301 |
catgatcatacacaaaatatagagaagatgagtattgcaagttcaaacttgtctcatgcgatattattatcatcagttgtatttacaggaaaaaaaa--- |
47627397 |
T |
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| Q |
101 |
tgactcaaatgttt-aatttacaatacataaaaaataacagatccaaaaagatctgtaaacagactcgatgtttgttgcttacatttatgaaaatatttt |
199 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47627398 |
tgactcaaatgttttaatttacaatacataaaaaataacagatccaaaaagatctgtaaacagactcgatgtttgttgcttacatttatgaaaatatttt |
47627497 |
T |
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| Q |
200 |
ttctaagaatttgacattttttaatacactcatccttcat |
239 |
Q |
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||||| ||||||||||||||| |||||||||||||||||| |
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| T |
47627498 |
ttctaggaatttgacatttttgaatacactcatccttcat |
47627537 |
T |
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