View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_high_41 (Length: 236)
Name: NF13138_high_41
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_high_41 |
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Alignment Details
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 73 - 221
Target Start/End: Complemental strand, 47626886 - 47626742
Alignment:
| Q |
73 |
ctactcaatttactattggacctcactttagggaaataaaaaccccaaacccacgttttggcgcgaaagattgcttcattctctcgtttcttccaccact |
172 |
Q |
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| T |
47626886 |
ctactcaatttactattggacctcactttagggaaataaaaaccccaaacccacgttttggcgcgaaagattgcttcattctctcgtttcttccaccact |
47626787 |
T |
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| Q |
173 |
catcactactagggtttaatcaatcgttttgtaatctctgcaacaaaac |
221 |
Q |
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| T |
47626786 |
catcactactagggttt----aatcgttttgtaatctctgcaacaaaac |
47626742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 10 - 40
Target Start/End: Complemental strand, 47627289 - 47627259
Alignment:
| Q |
10 |
cacttcatatacgaaacaaatctaataatat |
40 |
Q |
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| T |
47627289 |
cacttcatatacgaaacaaatctaataatat |
47627259 |
T |
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