View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_1 (Length: 781)
Name: NF13138_low_1
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 10 - 603
Target Start/End: Original strand, 14538290 - 14538903
Alignment:
| Q |
10 |
attattctctaaattaaaaccaatagtatctaagttggtgtagttaatcatgtgtgagtgggaagtttcaaattagattaaggaatatatacattgatta |
109 |
Q |
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|||| |||||||||||||||||| || |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14538290 |
attaatctctaaattaaaaccaagagaatctaagttgatgtagttaatcatgtgtgagtgggaagtttcaaattagattaaggaatatatacattgatta |
14538389 |
T |
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| Q |
110 |
agacattaaggaatttatcatatctctattgccttaaaattttagatttagatattcctattg--------------------tcaactcatttgtgtgg |
189 |
Q |
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| T |
14538390 |
agacattaaggaatttatcatatctctattgccttaaaattttagatttagaaatccctcttgacttaaaattttagtggttgtcaactcgtttgtgtgg |
14538489 |
T |
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| Q |
190 |
atgctcttaatttaatgtaatgatcccaactattttagtcttccttaagcgtgaacatatgtggtatatgatcacttagtgatcctaaatcattaacttg |
289 |
Q |
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| T |
14538490 |
atgctcttaatttaatataatgatcccaactattttagtcttccttaagcatgaacatatgtggtttatgatcacttagtgatcctaaatcattaacttg |
14538589 |
T |
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| Q |
290 |
ttgatttgaacgctctcccaactctataacttgtgatatcataagcctggtgatgcggcttgatggagagcgagagtggatacccgtattaaaagtttct |
389 |
Q |
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| T |
14538590 |
ttgatttgaacgctctccgaactctataacttgtgatatcataagcctggtggtgcggcttgatggagagcgagagtggatacccgtattaaaaagttct |
14538689 |
T |
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| Q |
390 |
tgacggtgtaatcacaagatgtgttacgttggtaataacaacgttatgagtataagatgttggagactcactcactcttaacctaatgtgatgatctcac |
489 |
Q |
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| T |
14538690 |
tgacggtgtaatcacaagacgtgttacgttggtaataacaacattaagagtataagatgttggagactcactcactcttaacctaatgtgatgatctcac |
14538789 |
T |
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| Q |
490 |
gtgttttacacctcctctgaatttaggcatatatattgtaaaatctttttacaaattaacacaaaacatagtaagatttatactcttggtgcatagagat |
589 |
Q |
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| T |
14538790 |
gtgtttaacacctcctctgaatttaggcatatatattgtaaaatctttttaaaaattaacacaatacatagtaagatttatagcgttggtgcatagagat |
14538889 |
T |
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| Q |
590 |
ttatacaaaatata |
603 |
Q |
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| T |
14538890 |
ttatacaaaatata |
14538903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 626 - 764
Target Start/End: Original strand, 14538966 - 14539104
Alignment:
| Q |
626 |
atcactttatatataaaaccaatcaatgaacattcataatcatacacacaaagtaacatttatacaagtgagtgagaatcttaccggtggtctactgtga |
725 |
Q |
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| T |
14538966 |
atcactttatatataaaaccaatcaatgatcattcataatcatacacacaaagtaccatttatacaagtgagtgagaatcttaccggtggtctactgtga |
14539065 |
T |
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| Q |
726 |
caaacagaatcatggtcgtctatggtggtggtcctggtg |
764 |
Q |
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| T |
14539066 |
caaacagaatcatggtcgtctatggtggtggtcctggtg |
14539104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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