View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF13138_low_10 (Length: 454)
Name: NF13138_low_10
Description: NF13138
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF13138_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 44 - 428
Target Start/End: Original strand, 22774036 - 22774417
Alignment:
| Q |
44 |
tgtgttcataagtcgtattaccgttcttaatttaggatttgtgattataaagatagaaaacgaaagttgaagtttagtgtagttcaattcagagttgtga |
143 |
Q |
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| T |
22774036 |
tgtgttcataagtcgtattaccgttcttaatttaggatttgtgattataaagatagaaaacgaaagttgaag---agtgtagttaaattcagagttttga |
22774132 |
T |
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| Q |
144 |
taaaaaagattaagtgtagttttaatnnnnnnngattaagtgtaattgaatcttaatgttactaggtgttctttgcaattgaatatacttaacttcaatt |
243 |
Q |
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| T |
22774133 |
taaaaaagattaagtgtagttttaataaaaaaagattaagtgtaattgaatcttaatgttactaggtgttctttgcaattgaatataattaacttcaatt |
22774232 |
T |
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| Q |
244 |
tgtgatattttttgttaaaatctttatgacgtaatgatcttttgattaacttcaatttgttgatgaaatcttgtgatattttgaaaacagtggatgtgaa |
343 |
Q |
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| T |
22774233 |
tgtgatattttttgttaaaatctttatgacgtaatgatcttttgattaacttcaatttgttgatgaaatcttgtgatattttgaaaacagtggatgtgaa |
22774332 |
T |
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| Q |
344 |
gatcaaggatggtaggataacaactatacgacagatggatacaccggtttcagacgataatgctcgatttgatattaccatactc |
428 |
Q |
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| T |
22774333 |
gatcaaggatggtaggataacaactatacgacagatggatacaccggtttcagacgataatgctcgatttgatattaccatactc |
22774417 |
T |
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